BAC Information

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BAC

Clone NameMSMg01-396F21
Chromosome6 (Build37)
Map Location 109,398,758 - 109,543,276
singlet/doubletdoublet
Overlap genenone
Upstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396F21.T7 (MSMg01no396_f21.b1)MSMg01-396F21.TJ (MSMg01no396_f21.g1)
ACCAG496962AG496963
length779844
length of high quality
(start - end)		501 (37 - 537)236 (67 - 302)
definitionCHROMAT_FILE: MSMg01no396_f21.b1 PHD_FILE: MSMg01no396_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:28 2005CHROMAT_FILE: MSMg01no396_f21.g1 PHD_FILE: MSMg01no396_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,542,951 - 109,543,276)(109,398,758 - 109,398,993)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAG
ATTTCTCCTTCACAACCCACCTAGAACCCTGGAGGTCTCTGTATGAATAA
TAATCTCCCTGGAATCTAATTTTATGGAGTCTGACACTAAACTATCACAA
GTTGGGTCTATTGATGTCTCAATGGTAAGATGTTTGCTGTGTGAGCATGA
AGACCTGACCTTAAATCCTTAGAACCCATGTAAAGCCCAGTGCAATAGCC
TTGGTTTATACTCCAATCATTCTTATTGCAAGGCAGGAGGCAGAAACAGG
AGAATCCCCAGAAGTTTTCAGACCAGGTACCCTGGCTTGTGAAGCAGCCC
AGAGATAGTCTCAAAGAAGCTGGAAGATTAGCATCCAAAGTTGTCCTCTG
ACCATGACGTGGGTGCTATAGAATATGTGAGCACACACTCATATTCTCTC
TCTCTCTTTCTCTCTCTCTCTCTCTCACACACACATACACACACACACAC
ACACACACACACACACACACACACACACACACTAGAAACTATGTACACCT
ATTTTTCATAAATGAAAAACTTATAAGAATCTCCAGCTGATGTACAAAAA
ACCCAGGAACAAAAGCTTTTGTTTATTATGTTATAAAACTCCCTCAAAGA
ATTCTTTTCCATTTTGTAATTATTGCGCCCCGTGGGAGGGAAAAAAAAAT
TTGGAAAAAAAATTTAAAAATCCCCCCCCCCCCTTCTAAATTTTTTTAAA
ATCGGAAGTCTCCCCCAAAAAATAAGAAC

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTATGCTAGAGTGGGCGTGTAAATAAAGAAATGG
AATAAAATAATGCTATATGGTTGAGAGGTGGGAAGAATAAGAGAAGCTCT
TTATTTGCTATGCATTCAATGTTCTATTTATGTCAGTATCATACCAGTTT
AATTAACCTAACAGTGAACTTGAAGCCTGTGGGAGTAAGTGAGGTGTAAT
TTGAAGTTTGGCTGTCTTATAGGTAAAGAGAAGTGGGAGATAGGTTAGAA
GTCNGAGAGTGGTTTTTTTTTTTTNTGGGNGTTCGTCTTTGTGCTTTTTT
TGTTTTCCCTCCCCCCCTTTCCCTACTATCCTTGGTTTCCTTCTCTCGTT
TTTTTTTTCTTATATCCCCCCCCCCCCCCTCTTTTCTTCTTTTTCCCCTT
ACTTTCCTATTTTTACTGTTAATCTCCCATTATCTTATTCCTCCTTTTTA
TTACTTCTTTTTTCCCTTCCCCTTTTTTTCCTTTCCTTTTTTCCCCTTAT
TGCCTCCTTTTTCCTTTTTTCCCCTTTCTCTCCCTCCCTTTTCCACTCCC
CATTTCTCTTTTCCTTTTTCTCCCCCTTTTTTCCTTTTTCCCCTTTCCTT
TTTCTCTTTACCTGCCTTCTTTTCTCTTTTTTCTCTCTCCTTCTTTTCCC
CCCCTCTTTCCCCTTTTCTCTTCCTTTATTTGTCCCTCGTCTTTTTCCCC
TCCCCTAACCTTATTTCCCTATTTATTCCTTCCTTACTAATATACTACCC
ACTATTTCTTCCTCCTATACATTATCTTTTCCCGCTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_f21.b1 MSMg01no396_f21.b1 CHROMAT_FILE:
MSMg01no396_f21.b1 PHD_FILE: MSMg01no396_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:28 2005
         (501 letters)



>mm_chr6_109542951_109543851
          Length = 901

 Score =  592 bits (306), Expect = e-173
 Identities = 321/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagatttctccttcacaacccacctagaaccctggaggtctctgtatgaataa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaattctgagatttctcattcacaacccacctagaaccctggaggtctctgtatgaataa 267

                                                                       
Query: 65  taatctccctggaatctaattttatggagtctgacactaaactatcacaagttgggtcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taatctccctggaatctaattttatggagtctgacactaaactatcacaagttgggtcta 207

                                                                       
Query: 125 ttgatgtctcaatggtaagatgtttgctgtgtgagcatgaagacctgaccttaaatcctt 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 ttgatgtctcaatggtaagatgtttgctgtgtgagcatgaatacctgaccttaaatcctt 147

                                                                       
Query: 185 agaacccatgtaaagcccagtgcaatagccttggtttatactccaatcattcttattgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agaacccatgtaaagcccagtgcaatagccttggtttatactccaatcattcttattgca 87

                                                                       
Query: 245 aggcaggaggcagaaacaggagaatccccagaagttttcagaccaggtaccctggcttgt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 86  aggcaggaggcagaaacaggagaatccccagaagttttcagaccaggtaccctggcttat 27

                                     
Query: 305 gaagcagcccagagatagtctcaaag 330
           ||||||||||||||| ||| ||||||
Sbjct: 26  gaagcagcccagagagagtttcaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_f21.g1 MSMg01no396_f21.g1 CHROMAT_FILE:
MSMg01no396_f21.g1 PHD_FILE: MSMg01no396_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:28 2005
         (236 letters)



>mm_chr6_109398558_109399193
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgctagagtgggcgtgtaaataaagaaatggaataaaataatgctatatggttgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatgctagagtgggcgtgtaaataaagaaatggaataaaataatgctatatggttgaga 260

                                                                       
Query: 61  ggtgggaagaataagagaagctctttatttgctatgcattcaatgttctatttatgtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgggaagaataagagaagctctttatttgctatgcattcaatgttctatttatgtcag 320

                                                                       
Query: 121 tatcataccagtttaattaacctaacagtgaacttgaagcctgtgggagtaagtgaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcataccagtttaattaacctaacagtgaacttgaagcctgtgggagtaagtgaggtg 380

                                                                   
Query: 181 taatttgaagtttggctgtcttataggtaaagagaagtgggagataggttagaagt 236
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttgaagtctggctgtcttataggtaaagagaagtgggagataggttagaagt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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