BAC Information

Click to search

BAC

Clone NameMSMg01-396H02
Chromosome6 (Build37)
Map Location 117,738,741 - 117,738,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370
Downstream geneEG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396H02.T7 (MSMg01no396_h02.b1)MSMg01-396H02.TJ (MSMg01no396_h02.g1)
ACCAG497019AG497020
length748778
length of high quality
(start - end)
405 (67 - 471)238 (66 - 303)
definitionCHROMAT_FILE: MSMg01no396_h02.b1 PHD_FILE: MSMg01no396_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:34 2005CHROMAT_FILE: MSMg01no396_h02.g1 PHD_FILE: MSMg01no396_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTT
CAACAATTACTCGAAATTTCACTTAGCAACCTGCGGAAGCTTCTATAAAA
TAGATCACATCCTCAAACAAAATAAATCTTAATAAGTTGAAATAATTCCA
TGTATCCTATCTGACCACAATATAATAAAGCATACAATCAATAGCAAGTG
GTTATGTACTAATTACACAAACTCATGGAGATTAAATAACAAACTACTGA
ATGATGAATGAGTCAATGAAGGAACCAAGAAAAATTAAAACTAACTAAAT
AAAAGTCCTGGCACTAAATGAAAATGAAAACACAGCTCAACAAACCCTTG
GGACACATAAAACATTTCCCAAGAGGGAAATTCATAGACCAAAGACACTA
TATTTTAAAAAAAAAAAGCACAAATAAATGACTTAATGGTACAATTGAAG
AGTTTGGAAAAACAAGAACAAGCCAACCCAAATCCAGTATACAGCTAGGA
ACAATATAAATCTGAGAAGAAAAATGAGTTAGAAGGAAAGAAAACAACAC
GAATAACCAATATAGCTAAGCCTGGTTCCTTAAGAAGATAAACTAGATGA
ACTAACTCTTGGCTTAATTAATCTAAAGAAATATTGAGATGACCCCTATT
TATTCCCATCCCGATATTGACTGGCGAAATGTCACCTCAGATATCTCACA
ACTTTTTCGCCTATCTTTTATAACCACTTCCTATATTCTTCTCCTTCG
GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTAGGGAAATGGGGGCTTGGGGATACTGGCAAAA
GTTTTCCTTTGTAAAAGTAAACAAGGCTCCATTTTCTCTGCTATTCACAT
GTCATCTTTCCCCCTGCCTTTTAATCATCCTGCAGATGGACTCACAAAGT
CCGGATGGGCAGGCACGGGGCCATTTCTGTGTGTGGACACACACAGGCCC
TGTGAGCAAGCTCAAAGTCCCAAGGGAGGCAGGCTCCGAGGGGACCCAGG
GTCAGGTGCAGATCCTGAGCACTGTCTGCTATTTCATGACTACTTAGTGA
TCCAGATAAACACATGGTACTCCTGCTCAGGTTCAGCAGTCTTGCTAAGC
TGTGTGTGCGTGTGCGTGTGTGTGTGACCACTGAAGGATGTGAGAGTCAA
AGTTGCCACATTTTGGTATAGAAAGTGTTAATGAAATAGATAGTGTGATG
TGTATTGTGGGCTCATCATATACTCAGCTTCATACTTTGGATATTTTTCA
CTCTGCCATCTAGAGACAGTATTTATGCACTTGCTCATATCTTTATAGCT
TCCGTTTTATTGCCTGCTTTTTCTTTCCATTTATATTGCTTCCATCTTGC
CCGTACTCACACCTATGCCGTTTTCGTTGCCCATCCCAATTTACCCGTTT
TTTTCTGCTTTCTTCCTCGCCGTTTTCCCTCTCTCTTTTTATCCATTTAT
ATCTTCCCCCTTTTTCCTTTATTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_h02.g1 MSMg01no396_h02.g1 CHROMAT_FILE:
MSMg01no396_h02.g1 PHD_FILE: MSMg01no396_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:34 2005
         (238 letters)



>mm_chr6_117738541_117739178
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagggaaatgggggcttggggatactggcaaaagttttcctttgtaaaagtaaacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttagggaaatgggggcttggggatactggcaaaagttttcctttgtaaaagtaaacaag 379

                                                                       
Query: 61  gctccattttctctgctattcacatgtcatctttccccctgccttttaatcatcctgcag 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 378 gctccattttctctgctattcacatgtcatctttccctctgccttttaatcatcctgcag 319

                                                                       
Query: 121 atggactcacaaagtccggatgggcaggcacggggccatttctgtgtgtggacacacaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 318 atggactcacaaagtccggatgggcaggcacggggccatttctgtgtgtggacacacata 259

                                                                     
Query: 181 ggccctgtgagcaagctcaaagtcccaagggaggcaggctccgaggggacccagggtc 238
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 258 ggccctgtgagcaagctcaaagtcccaggggaggcaggctccgaggggacccagggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)