BAC Information

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BAC

Clone NameMSMg01-397D20
Chromosome6 (Build37)
Map Location 138,315,804 - 138,316,053
singlet/doubletsinglet
Overlap geneLmo3
Upstream genePtpro, Eps8, Strap, Dera, 9830102E05Rik, Mgst1
Downstream geneIgbp1b, EG668196
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397D20.T7 (MSMg01no397_d20.b1)MSMg01-397D20.TJ (MSMg01no397_d20.g1)
ACCAG497626AG497627
length8551,063
length of high quality
(start - end)
250 (64 - 313)68 (67 - 134)
definitionCHROMAT_FILE: MSMg01no397_d20.b1 PHD_FILE: MSMg01no397_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:36 2005CHROMAT_FILE: MSMg01no397_d20.g1 PHD_FILE: MSMg01no397_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCTAG
ACAAATTGTCAATCTATTTATTTTCCATCCAGGCAGCTTTGGAAATTTAT
CCCTTATACCAGCTAAGTAGATAGAGGGGGAAAATAGTGTAATAAAAAAA
CTAGATTGAAAAGAATTAGCTCTCCTCTTAAAGGAAAATTGGTCTGTTTA
TTTGTGGAATTTGCTTTTTCCCCAGGATTACTGCCTGCTGCTGATGTTGG
TTTAAAGTAGATGCTCAGCTCTGGTCTTGAAATCCTGGATTTGTTTGCAG
CTGCACTTACTGGATATTTTTTTTATTTAAGTTTGGCACTTTGAATATAT
TTTTCCTCCTTCTTCTTTTCCTCCCTCCCATATTTAGCCTATATGTTTCA
ATTATTGCCCCCCCCCCACCAACGCCTTAATAAATTGATTTTAGTTTTTT
ATTGTATCCCCCCCCCCGCCCCCCGCAACATATTGATTTATTTTCTTTTC
CCTTTTTTCTTCCTCCCGTTTCCTTTCTTCCCTTTTTTATTCTTTTGGCG
TACCACTCCTTCTCTCTATTTTTTCCTTGTTGGCCTTCTTTCTTATCCTC
CTCCCCCATTCCCTCTCTATCACCAGTTGTTTTTTTCTTCTTTCCTTGCT
TCATTCTATTCCCGCCTCTTTACACTGATTCCTTTTTATTCCGCCCCGCC
CTTCCCTTTCTATTCCCTTTATCCTTCCTTTCCGCTCTCCCTCTTTCTTT
TTCTTTCCTCCCATCCTTTTCTCCCTCCCTTTTTCCCCCCCATTCCTTTA
TTTTTCATCCCCTTCTCACTACCACTCTTTATCCTTTCTTTTTTGCACCT
TTCTG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATTTAGATTTGTACTTGATTATTTTTAAAAATT
AGGTTGTTTGATATTTCCCTAATTGAGTTCTTTACATATCTCCCGCCCTC
CCTCTTTTTTCTGCCCGGCGGGGGCGCCTTCCTCCCTCGTCCCCCTTCCC
TTCTTTCCTTCTTCCCCCTTCCCCCTCCCCCCCTTCCCCCTTCCCCCCCC
CCCTCTTTTTTTTCGTCTGTGCCTCCTCCCCTCTCCTTCCTTCTCCCTCT
CCCCTTCTCTCCCCCCACGTCCCCCCCCCCCTTTTCGTCCCTTCTTCCCC
CCGTCTCCCCCCCCCCCCCCTTANAACTTGTCTTTTTCCTCCCCTCTCTT
AGTCACCGTTGGGCATTCGCTTCTCTTTTCCCCCTTCGCCTTCTTTTCCC
CCCCCCCCCCCCCCCCTACCCACCAACTCTCTCTCTCCCCGCTCTTCCTT
TCTCCCCCCGCCTTCTCCCCCTTCTCGTTCTCTCTCCGCTTGGCTTCCTC
CTTCCCCTCTCCCTCCTCCTCGTCTTGTCCTCCCAATCTCTATCCTCCCT
CCCCCGCTGCTACTCTTTCTCTCCCCTTCTCCTTTCATCTTTCCTTCCCC
TCACCCACACCTACTCCCGCCCTTGTCCTCACGCTTCCTTCCCTTCTATC
AATCTATCGTCCCCCGCCCCTCTCATTCTCTTCTCCATTTTCTTCTTCCC
TTCCCCCCATCATTCCCCTCCGCCGTTTTATCCTCGCGCCTCGCTCTCCC
GCCCGTATTCACTTCCTTATCTCTATTCTCTTATATCTTACCGCCTCTTC
TCCCCTCCGCCTATCTGGTATATACTCCTCCCTTCATCATCCTCACGTCT
CTCCGGTTCCTTCCCTCGAACCTAGCGCGCTTTCCTTGTTTATGTAGTCT
CGATACTCTCTTGTACTTTCTCTCATGCGTGTCACTCTCACTTCGTCCTC
ACATCGTATCGCTATCTTTGCTTTGTCCCGCATGCTCTACGCTCTATCCC
GACACTTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_d20.b1 MSMg01no397_d20.b1 CHROMAT_FILE:
MSMg01no397_d20.b1 PHD_FILE: MSMg01no397_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:36 2005
         (250 letters)



>mm_chr6_138315604_138316253
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttattttccatccaggcagctttggaaatttatcccttataccagctaagtagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttattttccatccaggcagctttggaaatttatcccttataccagctaagtagata 260

                                                                       
Query: 61  gagggggaaaatagtgtaataaaaaaactagattgaaaagaattagctctcctcttaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggggaaaatagtgtaataaaaaaactagattgaaaagaattagctctcctcttaaag 320

                                                                       
Query: 121 gaaaattggtctgtttatttgtggaatttgctttttccccaggattactgcctgctgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaattggtctgtttatttgtggaatttgctttttccccaggattactgcctgctgctg 380

                                                                       
Query: 181 atgttggtttaaagtagatgctcagctctggtcttgaaatcctggatttgtttgcagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttggtttaaagtagatgctcagctctggtcttgaaatcctggatttgtttgcagctg 440

                     
Query: 241 cacttactgg 250
           ||||||||||
Sbjct: 441 cacttactgg 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)