BAC Information

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BAC

Clone NameMSMg01-397G02
Chromosome6 (Build37)
Map Location 106,198,300 - 106,376,572
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397G02.T7 (MSMg01no397_g02.b1)MSMg01-397G02.TJ (MSMg01no397_g02.g1)
ACCAG497734AG497735
length785791
length of high quality
(start - end)
241 (73 - 313)267 (75 - 341)
definitionCHROMAT_FILE: MSMg01no397_g02.b1 PHD_FILE: MSMg01no397_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:48 2005CHROMAT_FILE: MSMg01no397_g02.g1 PHD_FILE: MSMg01no397_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,376,333 - 106,376,572)(106,198,300 - 106,198,562)
sequence
ATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCATGTTCTTACCTAGCTGGACATATGTGGCCTTAGAGTTATTTTAGG
CAAATCAAGGCTGTGATAATAAGCAACTATAATAAGTTTCTTGGGACAGT
ATGCACTAATCTGCTGTGCACTGGTTGAAGAACACTGAAGGACAGGAAAA
ACAAGGATTCGTACAGAAGGAAATCTCTCAGATGAGGAGCAGCTGTTATG
TATGTTGAATTTAAGATGTTTCATAAACTTTAACCATATATTTTTATCTC
ATTTAATTACAGCTTTGAATATAACACCATCATCAACTCTCCATGCAAGC
TCTGTGTTTATTCACTGAGTATTTTGATTTTGCTCACCCTGCTGTTTCAC
GCTCTCATTCTTCTAACGAGGACTCCGGATGTCCCTATCTTGTTATGTTA
GACACTGATCAACTATGCCCACGTTTTTGCACCCCGTCTTACCTTTCACT
GCCCCACCCATTATCCTACTATCATTCCCGTTATCCCCCCCACTCATCTC
GCTTTATGTTGATTGCCATCCCTTACCCCTTTACTCTTTCCCTTTTTTCC
TCTCCATCCCACTTCTTTCTCTTCAACCTCTTTTCCCCGTCTTCCTTTTT
TTTCCCCTTTTCCCCCCGCCTCTTTCTTCCCCCCTCCTCTTATTCCTCGT
CTCTCTTCTTTCACTATTCATCTCCTTTTTTTCTTCCCCCTCTTCTCCCC
CCCTTCCTATCCACCTTTTCTTTCAAACTCTTTAC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTGGCAATGAGTAAATATGGATT
TGCAAGACACAGCTCCCTGACCTATCCAGGGAGTGCTGAGTTTTTCATGA
GTTGTTTCATTTTTCTGGTAGACAGTGTGGCCACACTGCATTTAAACCAA
AACCCATTCACTGTCTACATACCTTCCATTCTTTCACCCAGAGTAACTTC
ACATCTCATGGTTTCCACATCCCCTTGAAAATTAGCTTGTAAATTTGTTG
TATTAATATAAAAATTTTTGAAGAAATGTAACAGTGAAAGAAGAAGGAGA
AGGAGAATTAGAATGAGGACAGGAGGAAGTGCAGACGCTTCTCCCTCTTT
TTCTTTTTTCCCTCCTCTTATTTTCTCCTGCTTGTTCTTTTCTATCCTTC
TTTCCTTTCTTCTATCCCCTCCCTTTCTTTTTTTTCTTTTACTCCCCCCC
TCCTTCTCCTCGTTTATTTTATTCGCCCTTCTCCCCCTACTTTCTTCCTT
TTTGTTTTCTTCCTCTTCCCTTTCCCTCTTTCCCTACTCTTCTATTCTCC
CCTCCTCTCCCTCTCTCCTTTCCCTATTCTTGCGCTCTTCTTTCACTATC
CCCCTCTTCCCCCCTTCTTCTCTTTTTTCTGTTCCACCCCCTTTATCTAC
CTTTAACTTTTTTCTCTCTTTATTCTCCTAATCTTCTCCCATCTTTCTTT
ATTCGTCTCTAACACACCTTTTTCTCTTCTCTTCTATATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_g02.b1 MSMg01no397_g02.b1 CHROMAT_FILE:
MSMg01no397_g02.b1 PHD_FILE: MSMg01no397_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:48 2005
         (241 letters)



>mm_chr6_106376133_106376773
          Length = 641

 Score =  418 bits (216), Expect = e-121
 Identities = 234/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatatgtggccttagagttattttaggcaaatcaaggctgtgataataagcaactataa 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 acatatgtggccttagagttattttaggcaaatcaaggctgtgagaataagcaactataa 381

                                                                       
Query: 61  taagtttcttgggacagtatgcactaatctgctgtgcactggttgaagaacactgaagga 120
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 taagtttcttgggacagtaggcacttatctgctgtgcactggttgaagaacactgaagga 321

                                                                       
Query: 121 caggaaaaacaaggattcgtacagaaggaaatctctcagatgaggagcagctgttatgta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caggaaaaacaaggatttgtacagaaggaaatctctcagatgaggagcagctgttatgta 261

                                                                       
Query: 181 tgttgaatttaagatgtttcataaactttaaccatatatttttatctcatttaattacag 240
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttgaatttaaaatgtttcagaaactttaaccatatatttttatctcatttaattacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no397_g02.g1 MSMg01no397_g02.g1 CHROMAT_FILE:
MSMg01no397_g02.g1 PHD_FILE: MSMg01no397_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:48 2005
         (267 letters)



>mm_chr6_106198100_106198766
          Length = 667

 Score =  470 bits (243), Expect = e-137
 Identities = 258/263 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttggcaatgagtaaatatggatttgcaagacacagctccctgacctatccagggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttggcaatgagtaaatatggatttgcaagacacagctccctgacctatccagggagt 260

                                                                       
Query: 61  gctgagtttttcatgagttgtttcatttttctggtagacagtgtggccacactgcattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gctgagtttttcatgagttgtttcatttttctggtagacagtgtggccacactgcatttt 320

                                                                       
Query: 121 aaccaaaacccattcactgtctacataccttccattctttcacccagagtaacttcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaaaacccattcactgtctacataccttccattctttcacccagagtaacttcacat 380

                                                                       
Query: 181 ctcatggtttccacatccccttgaaaattagcttgtaaatttgttgtattaatataaaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||
Sbjct: 381 ctcatggtttccacatccccttgaaaattagcttgtaaatttgttggatcgatataaaaa 440

                                  
Query: 241 tttttgaagaaatgtaacagtga 263
           | |||||||||||||||||||||
Sbjct: 441 tgtttgaagaaatgtaacagtga 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)