BAC Information

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BAC

Clone NameMSMg01-397M16
Chromosome6 (Build37)
Map Location 41,056,347 - 41,253,337
singlet/doubletdoublet
Overlap geneTcrb-V8.2, LOC100040359, LOC100040333, Try4
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790
Downstream gene1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397M16.T7 (MSMg01no397_m16.b1)MSMg01-397M16.TJ (MSMg01no397_m16.g1)
ACCAG498048AG498049
length763809
length of high quality
(start - end)
456 (69 - 524)341 (70 - 410)
definitionCHROMAT_FILE: MSMg01no397_m16.b1 PHD_FILE: MSMg01no397_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:20 2005CHROMAT_FILE: MSMg01no397_m16.g1 PHD_FILE: MSMg01no397_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(41,056,347 - 41,056,802)(41,252,997 - 41,253,337)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATCCGCGGAATT
CAGGAGCTGCCCAGAAGTAGGACATCTCTGATGGAGTGTGGAGGGCAGAA
TTTAGATCTCTAATGTGAGGTGGAATTGAAACATCCAGGTGGCAAGAGAC
AACTGACAATGTGGAAAGAACAAAATGAGCTAAGTGGGACCTGGGGTGCA
GAGGAGAGGCAAGTGGTGCTCTCAGAATGAGCATGTGTTAAAATTAATCC
ATGGTTTTGCCTTTCTCTGAATTCTGCACCATTCCATTTCTATCTTATAG
CATTTCCTACAATGTCTTTACTTTACTTCTATCCTCCAAGCAGCCTTATT
GATACAGGATAAAATGACAAACCTCAAACTCTGGTATCCTAGGCTTGATA
TTAGATAGTTCTGAAGCTCATTGATGTCACTGTGAGAACAACCCTGTGGG
TACAATGGATACCTGTATTTACTCTCTGTTGCTCACAGGGACTCTGATCT
AGATAGTTATCATCCTCTGCAAACCATGCCACGGACACCAGGCACTTCTG
ATATGTGGCCTCTTCCTTCCTAGGGGCAGGTGAACCCCCACAATGGCATG
AAGTTCACTGGCGGCTCGGCTGTCTGCCTCCCCCCCTCCCCCCCGTCTGG
CTGCCTGGCGGCCGGCCTCACTTTCCCCCCTCCTTTTTCCTCCCTGGGGG
GGGGGAGGGTGTGGGTTGCACACCCCTTTTCCCCCGCTCTTTTCACTCTT
CTTCTTCCTTATC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCGGCAGGTGTATCCTCCAACAATCTTGT
CATCATCATCCACAGGGAAAGCAACTTGAATAAAGACAAGAAGATCACTG
AGAAGACAATCCCTCAAGGTGTTGTTAGGTGGAGCCCTCAGCTCTCAACT
AACCAGGGGTTCTTAATTAATGCAAGAAGAAATGGCAAGATAGTAGCACT
GTATTTCTCTTAGGCATGGAACAGCTTGTTCAACACAGTACTGCACTACA
CAGCACTGCAAAATTATTGTAAGATACTCTGTATGTGACTTCACTCTCAT
GGATTCCCAGGCATAGGGCAAATGATGCTATCTGTATGCAGGAATAATGT
ATAGAGATGGCTGCGTGACCCTCTACTGNTTTTGATCTCATGTTCCTTTT
TTCTTTCTACTCTTTTGCCCGCCCCTCATTTCTCTCATTTTTTTTTGTAC
CGCCCCCCTCTCTATCTATACTCTTTGATCTGTCCCACTCCGACACTTTT
TACCTTTTTGTTCATTTCTTTTCCCCATTTCTTACTTCCCCAATTGTTTC
TTCGATATATCCTTCCCCTCTCCACTTTCTCTATCTTCCCTCCCCCTTTT
TCCAGCCCCCTCTTTTTCTTTTTCTCACATCTCCGCCTTCACGCCCCTTT
TTTACCCCGATTTTCCTTTTTCCCGTCTTTCTCTTTTCCTTGTTGTTTTC
TCTCGTACTTCTTTATACCACTTCTCTTCTTCCCTTTTCCTCTGCTCGTC
TATCATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_m16.b1 MSMg01no397_m16.b1 CHROMAT_FILE:
MSMg01no397_m16.b1 PHD_FILE: MSMg01no397_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:20 2005
         (456 letters)



>mm_chr6_41056147_41057002
          Length = 856

 Score =  851 bits (440), Expect = 0.0
 Identities = 452/456 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacatctctgatggagtgtggagggcagaatttagatctctaatgtgaggtggaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacatctctgatggagtgtggagggcagaatttagatctctaatgtgaggtggaattg 260

                                                                       
Query: 61  aaacatccaggtggcaagagacaactgacaatgtggaaagaacaaaatgagctaagtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacatccaggtggcaagagacaactgacaatgtggaaagaacaaaatgagctaagtggg 320

                                                                       
Query: 121 acctggggtgcagaggagaggcaagtggtgctctcagaatgagcatgtgttaaaattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 acctggggtgcagaggagaggcaagtggtgctctcagaatgagcatgtgttaaaattaaa 380

                                                                       
Query: 181 ccatggttttgcctttctctgaattctgcaccattccatttctatcttatagcatttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatggttttgcctttctctgaattctgcaccattccatttctatcttatagcatttcct 440

                                                                       
Query: 241 acaatgtctttactttacttctatcctccaagcagccttattgatacaggataaaatgac 300
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaatgccagtactttacttctatcctccaagcagccttattgatacaggataaaatgac 500

                                                                       
Query: 301 aaacctcaaactctggtatcctaggcttgatattagatagttctgaagctcattgatgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacctcaaactctggtatcctaggcttgatattagatagttctgaagctcattgatgtc 560

                                                                       
Query: 361 actgtgagaacaaccctgtgggtacaatggatacctgtatttactctctgttgctcacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtgagaacaaccctgtgggtacaatggatacctgtatttactctctgttgctcacag 620

                                               
Query: 421 ggactctgatctagatagttatcatcctctgcaaac 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggactctgatctagatagttatcatcctctgcaaac 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no397_m16.g1 MSMg01no397_m16.g1 CHROMAT_FILE:
MSMg01no397_m16.g1 PHD_FILE: MSMg01no397_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:20 2005
         (341 letters)



>mm_chr6_41252797_41253537
          Length = 741

 Score =  605 bits (313), Expect = e-177
 Identities = 334/341 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcggcaggtgtatcctccaacaatcttgtcatcatcatccacagggaaagcaacttga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctcggcaggtgtatcctccaacgatcttgtcatcatcatccacagggaaagcaacttga 482

                                                                       
Query: 61  ataaagacaagaagatcactgagaagacaatccctcaaggtgttgttaggtggagccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ataaagacaagaagatcactgagaagacaatccctcaaggtgttgttaggtggagccctc 422

                                                                       
Query: 121 agctctcaactaaccaggggttcttaattaatgcaagaagaaatggcaagatagtagcac 180
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 agctctcaactaactaggggttcttaattaatgcaagaagagatggcaagatagtagcac 362

                                                                       
Query: 181 tgtatttctcttaggcatggaacagcttgttcaacacagtactgcactacacagcactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtatttctcttaggcatggaacagcttgttcaacacagtactgcactacacagcactgc 302

                                                                       
Query: 241 aaaattattgtaagatactctgtatgtgacttcactctcatggattcccaggcatagggc 300
           |||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaactataggaagataatctgtatgtgacttcactctcatggattcccaggcatagggc 242

                                                    
Query: 301 aaatgatgctatctgtatgcaggaataatgtatagagatgg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatgatgctatctgtatgcaggaataatgtatagagatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)