Query= MSMg01no398_c02.b1 MSMg01no398_c02.b1 CHROMAT_FILE:
MSMg01no398_c02.b1 PHD_FILE: MSMg01no398_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:47 2005
(442 letters)
>mm_chr6_37008378_37009220
Length = 843
Score = 818 bits (423), Expect = 0.0
Identities = 435/439 (99%), Gaps = 1/439 (0%)
Strand = Plus / Minus
Query: 5 gaattctgcattttttgctctcaccactgggtcaaacatctattatatggtcagtactat 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaattctgcatttcaggctctcaccactgggtcaaacatctattatatggtcagtactat 584
Query: 65 cttacttttgtgaagatgcagtctaattaattattaagtccactgattaaatctgattaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cttacttttgtgaagatgcagtctaattaattattaagtccactgattaaatctgattaa 524
Query: 125 tgttcagtcttcagccagtaagtgtgactatcctgtaagactccctcctctgagtatttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgttcagtcttcagccagtaagtgtgactatcctgtaagactccctcctctgagtatttg 464
Query: 185 tagcaaatgttaagagaaaaatggttaggcaaagtaatcatggattgtggttcataaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tagcaaatgttaagagaaaaatggttaggcaaagtaatcatggattgtggttcataaaat 404
Query: 245 ctctaaagtaaa-ttaaagagtcactatgtgtcaacaactttgagttacttccatagaat 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctctaaagtaaaattaaagagtcactatgtgtcaacaactttgagttacttccatagaat 344
Query: 304 agttcaaggctacttagtggagagaagacatttaaattaatgggtcttctgaaacagaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agttcaaggctacttagtggagagaagacatttaaattaatgggtcttctgaaacagaga 284
Query: 364 gaaaaataatgctcacagctccactattgtaagtaaccacaatagggtgtcttcctagca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gaaaaataatgctcacagctccactattgtaagtaaccacaatagggtgtcttcctagca 224
Query: 424 ttgaaaatagtatgcttca 442
|||||||||||||||||||
Sbjct: 223 ttgaaaatagtatgcttca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 843
Length adjustment: 9
Effective length of query: 433
Effective length of database: 834
Effective search space: 361122
Effective search space used: 361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_c02.g1 MSMg01no398_c02.g1 CHROMAT_FILE:
MSMg01no398_c02.g1 PHD_FILE: MSMg01no398_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:47 2005
(503 letters)
>mm_chr6_36826624_36827525
Length = 902
Score = 919 bits (475), Expect = 0.0
Identities = 496/503 (98%), Gaps = 1/503 (0%)
Strand = Plus / Plus
Query: 1 agttgagagaccgtacacacacagtgtgttcggaactaactgctgatgtagcctgaaaag 60
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 201 agttgagagaccgtacacacacagtgtgtttggaactaactgctgatggagcctgaaaag 260
Query: 61 gatggacggttattggctttggctgtgcagcagcactgcaggggaaatggggtttaaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggacggttattggctttggctgtgcagcagcactgcaggggaaatggggtttaaggc 320
Query: 121 caggattcaaggaagagtgtgttctagagttctggaagattataggtttatgggtcaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggattcaaggaagagtgtgttctagagttctggaagattataggtttatgggtcaaat 380
Query: 181 ggctatcaggctgtacattaagcaccttatcagtccctaacacgactggacgctctctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctatcaggctgtacattaagcaccttatcagtccctaacacgactggacgctctctct 440
Query: 241 aaaatgatttatttttaataataaaagaaatagtattagctaaaaccttccttactggaa 300
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatgaggcatttttaataataaaa-aaatagtattagctaaaaccttccttactggaa 499
Query: 301 cagaggtgaaaccaagagaagaaaaatcagcaaaagctactttcagaaacagatgttagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cagaggtgaaaccaagagaagaaaaatcagcaaaagctactttcagaaacagatgttagc 559
Query: 361 tgaatatgtacgagaaaatgcagattttgaaaaacagtagtgcaatgacaaaggaggcta 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaatatctacgagaaaatgcagattttgaaaaacagtagtgcaatgacaaaggaggcta 619
Query: 421 tgtgcgctggcaactgctgtaattttttttattttaaaaatattcttattttgtttattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtgcgctggcaactgctgtaattttttttattttaaaaatattcttattttgtttattt 679
Query: 481 ataaattttattttatttattta 503
|||||||||||||||||||||||
Sbjct: 680 ataaattttattttatttattta 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 902
Length adjustment: 10
Effective length of query: 493
Effective length of database: 892
Effective search space: 439756
Effective search space used: 439756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
