BAC Information

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BAC

Clone NameMSMg01-399A06
Chromosome6 (Build37)
Map Location 143,951,601 - 143,952,168
singlet/doubletsinglet
Overlap geneSox5
Upstream gene5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149, Bcat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399A06.T7 (MSMg01no399_a06.b1)MSMg01-399A06.TJ (MSMg01no399_a06.g1)
ACCAG498983AG498984
length712773
length of high quality
(start - end)
573 (53 - 625)96 (248 - 343)
definitionCHROMAT_FILE: MSMg01no399_a06.b1 PHD_FILE: MSMg01no399_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:55 2005CHROMAT_FILE: MSMg01no399_a06.g1 PHD_FILE: MSMg01no399_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGA
ATCCGCGGAATTCATCAAATATTCCGGCATTTTATTTAGACATAGCCCAA
AGTGATGATAACTCTCTATCCAGATGGTCAGGAGTCTAATATATGGTGAT
AAGGATACTGGGGACTGTGTAAAACTGGTACATTATTATTTGTTAGTGAT
AAAGCAATCTGTACTGATTTCATCAGCCAAATTGACATGACCCTTGGGCT
CTGTGAGAATAGCAAGGCTCACTTGGGGCAAGACAGAAGTCACTCCCACC
TTCCCATGCTAAGACTTTTACCTAGAATGTACTGAAGAAGAGGCTGGAAT
TACAGTAAGCAACGTCCAAAGAGACTACGGTCCCCAACAACAGCCATGCT
ACCTCTCTGAATTCCAGCTCCCTCGAAGACAGAGGCATGGGAAAAAGCTA
AAGGAAACAGGTCTGTAAGTCCATCTCTGCTCATTCTTCTGGTGTCAGAA
CTCTCTCCAGGGAGCAGGATACATTGCTATCAAAGCAACTGTAGTTCAAT
GTACAGAAGATTCTAATAGCTGCTTCAGACTGAGTGCACGACCCAGGGTG
ATGTCTTGCTTCCTGTCCCTTAGCATTACAACTGTGTCCTTATTAGGTGG
GTCTTGCAATATATATATATATATATATACACATACATATATATATACCT
ATATATACATAT
TCCACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGGGACGGCTGAAAGTAA
AAGCGAAGAGTAGAAGGTGAGAACTGGGAAGCGGGTCACTTCTGCAGCAT
GAGGGTCGTTTGATTTGGGACTGTGGGCATGGTACTGCACAGCCCCCATT
TCTCATTTCACCTCTGTGAAACGCATCCACCTGCTAGGGTCAGGGAGCCC
CAGGGCCTTCCCAGTTAGGATGCTTATTTCCAGAGGCAGGTAGGAATCTC
TAAGACCTTAATAATTCGCTTGTCCACCCGAACTCAAATTTCAAGAGTCC
GTCAGTCGGAAATCGGGTACTGTGTGCCTGAAACTGTGTTGTCATTATAA
TCTCTAGCCCACCTAAGTAGCGTCACAACATTGATGTTCAAAGCGGGGAT
TTCTAGGTTGACCTTACGCAATAGTAGGTGCTCGTTGCGATTTCACGCTT
CTCTCGTCTCGTTAACCTGCTCCCCCACTTCCTTTTTTCGTTTCCCCTCA
CTTCTCTCTTCTTCCTCCCCCTTTCCACTTACTTCTCTCTCCCCCCCCTA
TATCTTTCTTCTAATTGTTGCCTCCTTTTACCCTTACGCTTCACCCTCCC
TATCCTTTTGTGCCCCCTACCTTTTGTCTCTTCTTTGTACCTTCCCCCAA
CCATTCCGTCTTGCTCTCCCTCTTTCCTTTTTCTCCTCTCCATCCTCTTT
TCTTTTTTTTCTCCCACCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_a06.b1 MSMg01no399_a06.b1 CHROMAT_FILE:
MSMg01no399_a06.b1 PHD_FILE: MSMg01no399_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:55 2005
         (573 letters)



>mm_chr6_143951396_143952368
          Length = 973

 Score = 1067 bits (552), Expect = 0.0
 Identities = 564/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcatcaaatattccggcattttatttagacatagcccaaagtgatgataactctct 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatcaaatattttggcattttatttagacatagcccaaagtgatgataactctct 265

                                                                       
Query: 66  atccagatggtcaggagtctaatatatggtgataaggatactggggactgtgtaaaactg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atccagatggtcaggagtctaatatatggtgataaggatactggggactgtgtaaaactg 325

                                                                       
Query: 126 gtacattattatttgttagtgataaagcaatctgtactgatttcatcagccaaattgaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtacattattatttgttagtgataaagcaatctgtactgatttcatcagccaaattgaca 385

                                                                       
Query: 186 tgacccttgggctctgtgagaatagcaaggctcacttggggcaagacagaagtcactccc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgacccttgggctctgtgagaatagcaaggctcacttggggcaagacagaagtcactccc 445

                                                                       
Query: 246 accttcccatgctaagacttttacctagaatgtactgaagaagaggctggaattacagta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 accttcccatgctaagacttttacctagaatgtactgaagaagaggctggaattacagta 505

                                                                       
Query: 306 agcaacgtccaaagagactacggtccccaacaacagccatgctacctctctgaattccag 365
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 agcaacgtccaaagagactacggcccccaacaacagccatgctacctctctgaattccag 565

                                                                       
Query: 366 ctccctcgaagacagaggcatgggaaaaagctaaaggaaacaggtctgtaagtccatctc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctccctcgaagacagaggcatgggaaaaagctaaaggaaacaggtctgtaagtccatctc 625

                                                                       
Query: 426 tgctcattcttctggtgtcagaactctctccagggagcaggatacattgctatcaaagca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgctcattcttctggtgtcagaactctctccagggagcaggatacattgctatcaaagca 685

                                                                       
Query: 486 actgtagttcaatgtacagaagattctaatagctgcttcagactgagtgcacgacccagg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 686 actgtagttcaatgtacagaagattctaatagctgcttcagactgagtgcaggacccagg 745

                                       
Query: 546 gtgatgtcttgcttcctgtcccttagca 573
           ||||||||||||||||||||||||||||
Sbjct: 746 gtgatgtcttgcttcctgtcccttagca 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)