Query= MSMg01no400_b14.b1 MSMg01no400_b14.b1 CHROMAT_FILE:
MSMg01no400_b14.b1 PHD_FILE: MSMg01no400_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:17 2005
(447 letters)
>mm_chr6_145677978_145678824
Length = 847
Score = 833 bits (431), Expect = 0.0
Identities = 443/447 (99%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 1 caagtattcacttggcttttatgagcttattagagacaggttcccctgttccccttcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtattcacttggcttttatgagcttattagagacaggttcccctgttccccttcctt 260
Query: 61 tcccttagaacttaaggctatgagaatgaactcagtcctcactcagccaaagcctgcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccttagaacttaaggctatgagaatgaactcagtcctcactcagccaaagcctgcatg 320
Query: 121 tgcaccctttgatcctgcaccaacttgggctgtgtgttttaatcctcatctgctatagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgcaccctttgatcctgcaccaacttgggctgtgtgttttaatcctcatttgctatagtg 380
Query: 181 ttttgatcttatctattttaatttttaaaaaaaaagttacaggaaatttacaactatgtt 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgatcttatctattttaattttt-aaaaaaaagttacaggaaatttacaactatgtt 439
Query: 241 attttgatgtgtgagaaaaccaaagcaagccaataattatataagcaaaatgttcagctg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 attttgatgtgtgagaaaaccaaagcaaaccaataattatataagcaaaatgttcagctg 499
Query: 301 tttctaagacaaatcatcagccacaaccaagtgtgaatgtaaataaacccacaaatttac 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttctaagacaaaccatcagccacaaccaagtgtgaatgtaaataaacccacaaatttac 559
Query: 361 cttcattccagtttatacttcattttaaaaataatccctgggcccccaatggagaagcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcattccagtttatacttcattttaaaaataatccctgggcccccaatggagaagcta 619
Query: 421 gagaaagcacccaaggagctgaagggg 447
|||||||||||||||||||||||||||
Sbjct: 620 gagaaagcacccaaggagctgaagggg 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_b14.g1 MSMg01no400_b14.g1 CHROMAT_FILE:
MSMg01no400_b14.g1 PHD_FILE: MSMg01no400_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:17 2005
(421 letters)
>mm_chr6_145879978_145880798
Length = 821
Score = 598 bits (309), Expect = e-175
Identities = 380/421 (90%), Gaps = 28/421 (6%)
Strand = Plus / Minus
Query: 1 ctgaaggaactaacaaaagctggtattcaaacagaacatgattcccgctgacatggacag 60
||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 648 ctgaaggaactgacaaaagctggtattcaaacagaaca----------tgacatggacag 599
Query: 61 cccggcagacatgaatctaacagaaatcagtgagccagcagattatctgtaattagctct 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 598 cccggcagacatgaatctaacagaaatcagtgagccagcagattacctgtaattagctct 539
Query: 121 tgatccatattaacagcacagcttctaggtgggcgcgtgggtctagttgggcgcgtgggt 180
| ||||||||||||||||||||| ||||||||||| | |||||
Sbjct: 538 ttatccatattaacagcacagct------------------tctagttgggcccttgggt 497
Query: 181 ctagttgggcctggctactcgagggatgacagcaggtaggttgtaagttcaaggctcaga 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 496 ctagttgggcctggctactcgagggatgacagcaggaaggttgtaagttcaaggctcaga 437
Query: 241 tttaaggttttatggagaaatctgcagagaaaaattaagtatttgtttgtggaccctgct 300
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 436 tttaagggagtatggagaaatctgcagagaaaaatcaagtatttgtttgtggaccctgct 377
Query: 301 gtcagtgtcactgtcttagggcgtctatggcttggtgaatcaccatggctaaaagcagca 360
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 376 gtcagtgtcactgtcttagggcgcctatggcttggtgaatcagcatggctaaaagcagca 317
Query: 361 tggggaggaaagggtttacttcagcttgcaactcacaatgtatcaactcactgctacaat 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 316 tggggaggaaagggtttacttcatcttgcaactcacaatgtatcaactcactgctacaat 257
Query: 421 g 421
|
Sbjct: 256 g 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
