BAC Information

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BAC

Clone NameMSMg01-400G14
Chromosome6 (Build37)
Map Location 101,498,501 - 101,498,881
singlet/doubletsinglet
Overlap genenone
Upstream geneShq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400G14.T7 (MSMg01no400_g14.b1)MSMg01-400G14.TJ (MSMg01no400_g14.g1)
ACCAG500040AG500041
length793771
length of high quality
(start - end)
381 (70 - 450)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no400_g14.b1 PHD_FILE: MSMg01no400_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:43 2005CHROMAT_FILE: MSMg01no400_g14.g1 PHD_FILE: MSMg01no400_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCACXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCCAAAATCCGCGGAA
TTCCAAACCTTTCCATGGTCTCAACTCATACCCACATGTATGTGGCATAT
GTATAGAGAGACACACATACACATGAATAAATACACATAAATAAAAAGCT
GTTTATATTTTTATTGTAGTAAAACTCACACTCACACACCAAAGTGAGAA
CAGAAACATGAAATGGGTGTATTTATAATCACTTAACAATGTCAAATTGT
GGTTAGTAACATGTTCTCTCCATCACTCCCAAGTGATCAAACTGACCACT
CAGTTCTAAATGTTTCATTAAATACTTCCAAAAGAGAAACAGACAGGGAT
TTTGCCAATTATACAAGTTTACATCACCAGTATCTCATCTGAAGACAGTG
TTGTATTTCATGCTACTGTTTCAGGGGGGAGATTTGAAAAGAAGCTTGTT
GTAAGAGATACACGCTGATAAGACCTGATTGAAAAGCAAAGGACCCTGTA
ACCTCTTCCATGGGTATTTTGTTCCCTATTCCAAGGAGGAATGAAGTATC
TACCCGTTGGTCTTTCTTCCTTGATTTTCTTGGGTTTTGGCAAATTGTTT
CTTGTGGATTCCCAACTTTTTTTGCTAATTATCCCCCTTTCCGTCAACCG
CCTATCCTACCTCTCTTTTTCTGCATATGAATTTCTCCCACCCTTTATAT
AAACCTCCAAAAATTCTCCCCCTTCCCCACTATTCCAATTATCCCGCCTA
TCTATACAATTCAGTCTTCCGTCTTCTCGTTATCACTCCCCCN
ACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATGTAGTTTTAATTTGTGTTTCTTC
TTAAGGATTAAGACAATGAGTACTTTTTGTATGCATATTTGTCTTCTTAT
TTTTCTTTAAGGAACTTTCTAGTTAGTTCATTTGCCCATTTAGCAATATG
ATTTTTTTTACTTGTTTAATTTTTTAAAATTTTCTCTATATTGTACATAT
TGATCCTCCGTGAGATGGTAATTGATCAGTCTCTACATTCTATAGGCTAT
CTCTTCACTCAGTTGCTTCTTTTCNCTATGGATCATCTGTTAAATATTAT
TATCTCTTCCTTTTCTTTCCTGCAACACCTCCCATATCTTTATCTACTCC
CTCTCAAATTTGTAGTTTAATTCATTTATCAATTCTTTTTAAAATATTTT
TATTTCTTGAGAAGTTCATGCAAAGTATTTAATTATGCTTACTCCCCCAG
CCCCAAATCTTCCCAGATTTATCCCCATAGCTCTACCATTCAACTTCATG
TCCCGTTTTTGTTATCTATTGAGTCAAGCTTATGTTGCCCATAAATTCTT
GGAACTAGAACCGCTCTTGATATTATCCGCTTTAAAGACAAAACTTAAAA
GGGCACATTTTTTATTAAATCCTGCCCCTTCCTTTCCCCAGGTATCAAGG
CCACAGCTCCTTTTTATAGGGAGGGGGGGGGCACCCCCCTGCCTCCTCTG
ATTATTTTTCCTTGGCCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_g14.b1 MSMg01no400_g14.b1 CHROMAT_FILE:
MSMg01no400_g14.b1 PHD_FILE: MSMg01no400_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:43 2005
         (381 letters)



>mm_chr6_101498301_101499081
          Length = 781

 Score =  690 bits (357), Expect = 0.0
 Identities = 375/381 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaactcatacccacatgtatgtggcatatgtatagagagacacacatacacatgaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaactcatacccacatgtatgtggcatatgtatagagagacacacatacacatgaata 260

                                                                       
Query: 61  aatacacataaataaaaagctgtttatatttttattgtagtaaaactcacactcacacac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aatacacataaataaaaagctgtttatatttttattgtagtaaaactcacacacacacac 320

                                                                       
Query: 121 caaagtgagaacagaaacatgaaatgggtgtatttataatcacttaacaatgtcaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagtgagaacagaaacatgaaatgggtgtatttataatcacttaacaatgtcaaattg 380

                                                                       
Query: 181 tggttagtaacatgttctctccatcactcccaagtgatcaaactgaccactcagttctaa 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tggttagtaacatgttctctccatcactcccaactgatcaaactgaccactcagttctaa 440

                                                                       
Query: 241 atgtttcattaaatacttccaaaagagaaacagacagggattttgccaattatacaagtt 300
           ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcttcattaaatacacccaaaagagaaacagacagggattttgccaattatacaagtt 500

                                                                       
Query: 301 tacatcaccagtatctcatctgaagacagtgttgtatttcatgctactgtttcagggggg 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 tacatcaccagtatctcatctgaagacagtgctgtatttcatgctactgtttcagggggg 560

                                
Query: 361 agatttgaaaagaagcttgtt 381
           |||||||||||||||||||||
Sbjct: 561 agatttgaaaagaagcttgtt 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)