BAC Information

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BAC

Clone NameMSMg01-401M09
Chromosome6 (Build37)
Map Location 46,700,503 - 46,700,663
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401M09.T7 (MSMg01no401_m09.b1)MSMg01-401M09.TJ (MSMg01no401_m09.g1)
ACCAG501078AG501079
length751753
length of high quality
(start - end)
191 (371 - 561)311 (324 - 634)
definitionCHROMAT_FILE: MSMg01no401_m09.b1 PHD_FILE: MSMg01no401_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:29 2005CHROMAT_FILE: MSMg01no401_m09.g1 PHD_FILE: MSMg01no401_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACACATGCGC
GGAATCNTTTATATACCAAAAAACAGGAATCTCTAAGGTTCCATTTTGCT
TTCTCAATGTAATTCCATACTAAACATAATTCCCCAAAAATTCCTATATG
TTTGTTTTAGTCAGGGTTTCTCTTCCTGCACAAACATCATGACCAAGAAG
CAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTCCATGCTGCTGTT
CTTTTTCAAAGGAAGTCAGGACTGGAACTTAAGCAGGTCAGAAAGCAGGA
GCTGATGCAGAGGCCATTTAGTANGTTCTTTACTGGCTTGCTCAGCCTGC
TCTCTTATAGAATCACATTACCAGCCCAGAGATGGTCCCACCCACAAGGG
GCCTTTCCTGCCTTATCACTAATTGAGAAAATGCCTTACAGTTGGATCTC
CTAGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCT
GTGTCAAGTTGACACAAAACTAGCCAGTACAATGTTTTTATTGCTATAAC
ACAATGACACGAGAACAGGTCTGTAGTATCTACTCAGTTAGTGTTTGTTA
GCATTAACTAAATTCTAAGTATTACCCATAGTTTAAGCTTGCACCCATTC
TATTTTTTTTTTTTCCTATGCGGTTAGCTTTTTCACAAAGAATTTGAGAA
TAGTAATTTACTAAACAATTATAGGCATTCCTTTTTTTCCTGCGATTTGC
A
NCCGATGCAGTGGGAGGCCTGGGGGCGCCTGGTCAAAAATTTAGGTGAAC
TATAGAAGTTCCGCAGAAAATCAATCATTTGAGTCCTATTCAAATGAATT
GGATTAATTGGAATGGAATCGAGTGACATATTTGATGGGAGTTCATAATT
CTCACCAGGCTTAAAGAGAGCAGAATGGGCCAAGTCATTCCATGTGAGCT
TAGCTTTGTTTTCTAGCTAAGGTCACTGGCACCATGGCCCCTCAAAAGTC
TGGTTGGTTTTTTTACATCAAAAGCTCTGGGAACAAACTATGGTAGCAGT
TTACCACAGACAGGTGGGTACNGCAGGTTGTTATTTCTTTGGTTCTCTTT
GTTCCTCTTAATTCTTTTCTCTTTTTAAATACAATGTGCTATTTTATTTT
ACATTGAAATTGTTGGAAGATTGATAATTCTGTAAATGTTATCAAAATAT
TTATATATATTTTGTTAAAATATAATTATATCATTTTCTCTCTTTCCTTT
CTTCCCTTTAGCCCCACCAATGACCCTCCACTTTCCTCACTTCCTCTCAA
ATCCATGGCCTCTTTATCCTTACTATAGTTGTATACATAGGGTTATGTAC
AATTAAATACATAAAATCAACCAGTTGCTTCCATTTAGGGNTGGTAATGC
TATTCTATATCATTGTTTCCAGCTCCTATCTCTTCACATTCTTTTGTGTC
CTAATGCAGTGGCTTCGACCTAGTGTTCATTGCTAACCTTAAATGCCCTT
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_m09.g1 MSMg01no401_m09.g1 CHROMAT_FILE:
MSMg01no401_m09.g1 PHD_FILE: MSMg01no401_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:29 2005
         (311 letters)



>mm_chr6_46700332_46701042
          Length = 711

 Score =  298 bits (154), Expect = 3e-85
 Identities = 160/162 (98%), Gaps = 1/162 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggttgttatttctttggttctctttgttcctcttaattcttttctctttttaaataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caggttgttatttctttggttctctttgttcctcttaattcttttctctttttaaataca 273

                                                                       
Query: 61  atgtgctattttattttacattgaaattgttggaagattgataattctgtaaatgttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atgtgctattttattttacattgaaattgttggaagattgataattctgtaaatgttatc 213

                                                     
Query: 121 aaaatatttatatatattttgttaaaatataattatatcatt 162
           ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 212 aaaatctttatatat-ttttgttaaaatataattatatcatt 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)