NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGCTATCCCTTTTTGTTAATGGCTTGATGGTTAGAGCTC
ACTACGGGCGAGGAAGAAGCTCTCTGCTTTAGCACTGCTACCCGGAGTAA
ATATTTACAAACCTGCCAACCTGGCATTGAGTTTTATAGAGTGAATGAAA
AGCAAGAAACCCAAATCTTATCTTCCTCCTCAGCTGAAAAATATTTGCAG
TAGAGGTGTCCAGCAGGGACAAGGCCTGTGTAATCAGGACGATGAGATGA
TCCATGCATGCTGCTGTGCTGTTCTGTGGTAGTTCTCCTGCAAATAGAAA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAA
CAAGAGAAGAATCACAGGTTTTTGAAATTTTTCTTTAATTATATGCCTGA
TGTTATTTTGAAACAGTGCAGATATTACCAAAAAGAAAATAAATGTATAC
ATCAAACTCTCAAGCAAACACTGGGAGCCTTGTGGTAATAGACTGTATAG
GATGTAGGTAAAACCCAAAGAAGTTACTTAAAAATTATTCACTGAATCAT
GTATTTTTTAAAAAGAGTGCAGGTACCTATTAACATTCTGGTCTTGATTT
GGTTTTTGCTTCAGGAAATTGAAAAAGAGGAGATAGTCATATGAGCTTTT
TCTGCTTGGCAAGACCAACCATTGCGTACAATTCCCACACAACAATCACT
T

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATCAGAAGTGCCTAT
GGCATTGTCAGTGAGAAACTGTTCAAGACGGCTAATTGATATAGGAGACG
TAAGGCCATTGTGAGCACTATCATCTTTAGTTGGCAAACTTTACCTGTCT
TGTAAATAAATCTAGTAGAGTGTGATCTGGAGAATAAGCCTGCCAATAAG
TAAGTAGTGTTCTCCTTCAGTTTATGCTTCTGGTCCTGCTTGTGCTCCTT
TCCTGACTTTCTTCTAGGATGATGTACTGTGACTTGGAGATGTCAGCCAT
CTCCCTTTCCTCTTCCAAGCTTCATTGGGTCAGTGTTAGTCAAAGCAATA
GAGAAGAAAATTAATATAGAAATTAGTACCACAGAGTGGGTGTTGATGTG
ATGGACCTGACCAAGTGGTCTTTCTGACTTGGACTGTTTTGCTACAGGAA
GGAGGAGAATATTTAAGCTGGAAAAGTCACTAAGAGCAGCTGACCCCTGT
TGGTGAATTAGGGAAGGCTGATAGAAGCTGAGGAGGAGGGTGATACTGTA
GGAGGACCATCAGTCTCAATTAATCTGGACCCTCAGGATCTTTCAAACAC
TGGACCATCAAAGAGACAGCATACACCAGCTGATATGAGGCTCCCAACAC
ACATATATTAGAAGACTTCTGGGTCTGTGCTCATTCAAAGATGATGCAC

Query= MSMg01no401_n01.b1 MSMg01no401_n01.b1 CHROMAT_FILE:
MSMg01no401_n01.b1 PHD_FILE: MSMg01no401_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:32 2005
         (608 letters)



>mm_chr6_102915576_102916584
          Length = 1009

 Score =  861 bits (445), Expect = 0.0
 Identities = 491/517 (94%), Gaps = 21/517 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgcta----tccctttttgttaatggcttgatggttagagctcactacgggc 60
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 gaattccttgctaaaag---ctttttgttaatggcttgatggttagagctcactacgggg 445

                                                                       
Query: 61  gaggaagaagctctctgctttagcactgctacccggagtaaatatttacaaacctgccaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 gaggaagaagctctctgctttagcactgctacccggagtaaatatttacaaaccggccaa 385

                                                                       
Query: 121 cctggcattgagttttatagagtgaatgaaaagcaagaaacccaaatcttatcttcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctggcattgagttttatagagtgaatgaaaagcaagaaacccaaatcttatcttcctcc 325

                                                                       
Query: 181 tcagctgaaaaatatttgcagtagaggtgtccagcagggacaaggcctgtgtaatcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcagctgaaaaatatttgcagtagaggtgtccagcagggacaaggcctgtgtaatcagga 265

                                                                       
Query: 241 cgatgagatgatccatgcatgctgctgtgctgttctgtggtagttctcctgcaaatagaa 300
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caatgagatgatccatgcatgttgctgtgctgttctgtggtagttctcctgcaaatagaa 205

                                                                       
Query: 301 aataataataataataataataataataataataataataataataataaacaagagaag 360
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ------------aataataataataataataataataataataataataaacaagagaag 157

                                                                       
Query: 361 aatcacaggtttttgaaatttttctttaattatatgcctgatgttattttgaaacagtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aatcacaggtttttgaaatttttctttaattatatgcctgatgttattttgaaacagtgc 97

                                                                       
Query: 421 agatattaccaaaaagaaaataaatgtatacatcaaactctcaagcaaaca-ctgggagc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 96  agatattaccaaaaagaaaataaatgtatacatcaaactctcaagcaaa-agctgggagc 38

                                                
Query: 480 cttgtggtaatagactgtataggatgtaggtaaaacc 516
           ||||||||||||||||| |||||||||||||||||||
Sbjct: 37  cttgtggtaatagactgcataggatgtaggtaaaacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space:   597402
Effective search space used:   597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)