BAC Information

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BAC

Clone NameMSMg01-401N18
Chromosome6 (Build37)
Map Location 139,178,122 - 139,178,349
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo3, Igbp1b, EG668196
Downstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401N18.T7 (MSMg01no401_n18.b1)MSMg01-401N18.TJ (MSMg01no401_n18.g1)
ACCAG501144AG501145
length757762
length of high quality
(start - end)
228 (327 - 554)551 (75 - 625)
definitionCHROMAT_FILE: MSMg01no401_n18.b1 PHD_FILE: MSMg01no401_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:35 2005CHROMAT_FILE: MSMg01no401_n18.g1 PHD_FILE: MSMg01no401_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAACACGATCCGNGGA
ATTCCATGACTTGCCACAACGAGTATTCACTGTGACCTCTAGAGAAAGAT
AGAAAATTCTGAGATCTAATCACAATGGGCATTTTACTACCAAACAGAAT
AATAAGACAACATCAGATCTCTTTAGAATTCTGTGAAATAGAAATCTAAA
TTTAAAATGCTGTTAAACTAGAGCATTACAATTATAATTCTCCCACCCTC
TTCAAATTTTTTCACCAGGCTTCTTCTTTACTCTGCAAGAAAAGGAAGAA
TAGATTTCATTTGAGTTGAATGATTGAAAATCTACACAGAGGAAGAAGAG
CTGCTACTTGAGCTAGAGGTTGTCTGTTTCCAGCAGTCTCACAAAATACC
GTTTTACCACCTTTTCTAAAAACATATTTTCAGCAGATATTATGAGAGCA
TTTATTATTTTGACACTGTTTTCATGTTGGGGAAGAAAGAGTGTCTTTCA
CCTTACATTCATACTGTCTTATTATAGGGAAGGTCAGGCAAGAGCTCATG
GCAGAAACCTGGAGGGAGACATGAGCTGAAGTGTAGGAACTCTGACTGTT
GACTTACTCTCTGGCTCACTTTTCTGAATAGCACAGGACCAACTTCTCAT
GATTGATCCACTAGTGAGTCTGGGCCTCTTACATCATCTATCAATCATTA
AAATGTCTCATCGATATGCCCACATGCCAACTGATGTAGGTAATCCATCA
TTTGGTG
CATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTAAAGAAAAACAAATACAGTCTTT
TAAGGAATACAGGAAAATACAATCAACCAGATGAAGGAATTAAATAAAAC
AGCCCAAGAACTAAAAATGGAAATAGAAACAATAAAGAAAACACAAAGGG
AGGCAATTCTGGAGATGGCCAATTTAGGAAAGAAATCGGGAAGTACAAAT
GCTAGTATCACCAACAGAATACAAGAGACAGAAGAGAGAATCTCAGCCTT
AGAAGATACCACAATCACTCTTTTTCAGACACTATTGTAGATGCCAATAA
GTGCTTGCTGACATGAGCCTGATATAGCTGTCTCCTGAGAGGATCTGTCA
GTGCCTGACAAATACAGAAGTGGATGCTCACAGCCATCCATGGGACAGTG
CACAGGGTTCCCAATGAAGGAGCTAGAGAAAGAACCCATGGGGTTGAAAG
GGTTTGCAGCCCTATAGGAGGAACAACAATATGAACTAACCAATACCCCC
AGAGCTCCCAGGGAATAAACCACCAACAAAAGAATACACATGGTGGGAAC
ATGACTCCAACTGCATATGTAGCAGAGGATGGCCTAGTTGGTCATCAATG
GGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCTATGCCCAGTGTAGGAGAA
TGCCAGGGCCAGGAAGCACGAGTGTGTACATTGGTGAGCTGGGGAGGGGG
CGAAGGTAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_n18.b1 MSMg01no401_n18.b1 CHROMAT_FILE:
MSMg01no401_n18.b1 PHD_FILE: MSMg01no401_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:35 2005
         (228 letters)



>mm_chr6_139177922_139178549
          Length = 628

 Score =  410 bits (212), Expect = e-119
 Identities = 224/228 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatctacacagaggaagaagagctgctacttgagctagaggttgtctgtttccagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaatctacacagaggaagaagagctgctacttgagctagaggttgtctgtttccagcag 369

                                                                       
Query: 61  tctcacaaaataccgttttaccaccttttctaaaaacatattttcagcagatattatgag 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 368 tctcacaaaataccgttttaccaccttttctaaaaacatatttccagcagatattatgag 309

                                                                       
Query: 121 agcatttattattttgacactgttttcatgttggggaagaaagagtgtctttcaccttac 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcatttattattttgatactgttttcatgttggggaagaaagagtgtctttcaccttac 249

                                                           
Query: 181 attcatactgtcttattatagggaaggtcaggcaagagctcatggcag 228
           |||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 248 attcatactgtcttattatagggaaggtcaggcaggaactcatggcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)