BAC Information

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BAC

Clone NameMSMg01-402B23
Chromosome6 (Build37)
Map Location 14,714,765 - 14,715,213
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797, Ppp1r3a
Downstream geneFoxp2, LOC100040568, Mdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402B23.T7 (MSMg01no402_b23.b1)MSMg01-402B23.TJ (MSMg01no402_b23.g1)
ACCAG501345AG501346
length731738
length of high quality
(start - end)
559 (78 - 636)449 (78 - 526)
definitionCHROMAT_FILE: MSMg01no402_b23.b1 PHD_FILE: MSMg01no402_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:55 2005CHROMAT_FILE: MSMg01no402_b23.g1 PHD_FILE: MSMg01no402_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGGTTTGTCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCATTTGGTGGT
CTCTTTGTCTTATTGACGGTGTTTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTT
GATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
ACATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATT
GTTCTGTAGTAAAGCTTTTAGTTCGGCCTGGTGATTTCACCAGAGGTTCT
TTTATCCTTGATAAGAGCTTTTGTTTTTCTN
NTCCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCTTGAAGACATCTATATAC
CAGAGTTTGATTCTTTTTTAACTGCAAAAATCATCAAAACAATATTTTCA
GTATTTGCCAATGTTCAATATTAAAATAATGGTAATTTTCATTGAACAAA
TTGCTGTCTCTAGTATTAGTAATAAATTACTTGTGTTGCTTAGAGATATA
GAGCTAAGTTCACAATGACCATGTTACACTAATTATTATTACAAGATAAT
ATGTCAGTTGATACAATAACTTGTTGTAAAGATGTTGGTTCATACAATTG
GTTATTCAAGGATATTCAAGGTTCTTTTAAAACAAAATAAAATACAAACA
ATATAAAGTACATGTGGCAAAAACAATAAACAAGATATTTTTATTCATTT
GTAAAAAATAAATGTGCTGAATTGAGAAGAGGACCTGTTGTCAACCATCA
CTGGATGAATGTACACTGAGCACAGAGGTGCGTTAGTAAGATGTCTCAAG
AGGAGAATATCTTCCCAAAATGGGTTCTGAACTAAGTGACTTTCATTATA
AAGCATAATTTTATGCCTTCTCATGCTGTATAAAATTGGGTGCTACCACT
TGATTTGACTGACTATGTCATCAGTCATTTTCATCTGTGAAGAAATCTTT
TAAACTTTCATGGCGGTCTCTACCTGAAGAACATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_b23.g1 MSMg01no402_b23.g1 CHROMAT_FILE:
MSMg01no402_b23.g1 PHD_FILE: MSMg01no402_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:55 2005
         (449 letters)



>mm_chr6_14714565_14715413
          Length = 849

 Score =  845 bits (437), Expect = 0.0
 Identities = 446/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcttgaagacatctatataccagagtttgattcttttttaactgcaaaaatcatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atctcttgaagacatctatataccagagtttgattcttttttaactgcaaaaatcatcaa 590

                                                                       
Query: 61  aacaatattttcagtatttgccaatgttcaatattaaaataatggtaattttcattgaac 120
           ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 589 aacaatatttttagtatttgccaatgttcaatattaaaataacggtaattttcattgaac 530

                                                                       
Query: 121 aaattgctgtctctagtattagtaataaattacttgtgttgcttagagatatagagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaattgctgtctctagtattagtaataaattacttgtgttgcttagagatatagagctaa 470

                                                                       
Query: 181 gttcacaatgaccatgttacactaattattattacaagataatatgtcagttgatacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gttcacaatgaccatgttacactaattattattacaagataatatgtcagttgatacaat 410

                                                                       
Query: 241 aacttgttgtaaagatgttggttcatacaattggttattcaaggatattcaaggttcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aacttgttgtaaagatgttggttcatacaattggttattcaaggatattcaaggttcttt 350

                                                                       
Query: 301 taaaacaaaataaaatacaaacaatataaagtacatgtggcaaaaacaataaacaagata 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 349 taaaacaaaataaaatacaaacaatataaagtacacgtggcaaaaacaataaacaagata 290

                                                                       
Query: 361 tttttattcatttgtaaaaaataaatgtgctgaattgagaagaggacctgttgtcaacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tttttattcatttgtaaaaaataaatgtgctgaattgagaagaggacctgttgtcaacca 230

                                        
Query: 421 tcactggatgaatgtacactgagcacaga 449
           |||||||||||||||||||||||||||||
Sbjct: 229 tcactggatgaatgtacactgagcacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)