Query= MSMg01no402_g20.b1 MSMg01no402_g20.b1 CHROMAT_FILE:
MSMg01no402_g20.b1 PHD_FILE: MSMg01no402_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:18 2005
(541 letters)
>mm_chr6_87097679_87098614
Length = 936
Score = 955 bits (494), Expect = 0.0
Identities = 523/536 (97%), Gaps = 7/536 (1%)
Strand = Plus / Plus
Query: 7 ggaattcctagtcttggtagctctgggaacttcagagccaggcaccatctggccaccgtt 66
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcctagtccaggtagctctgggaacttcagagccaggcaccatctggccaccgtt 266
Query: 67 tcacaagaaatctcagatgaaggctattgaatggggagaatatcaaaccagagagcgcag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 tcacaagaaatctcagatgaaggctattgaatggggagaatatcaaaccagagagtgcag 326
Query: 127 agaaaaaaaaaaaaaac-aaaccccagtgagccgcagttaagttagtaccttctagaaca 185
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ag------aaaaaaaactaaaccccagtgagccgcagttaagttagtaccttctagaaca 380
Query: 186 gcttatcctggaacaacactcatatctgcatagcagatgcactcacagcctgggggaggg 245
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gcttatcctggaacaacactcatatctgcatagcaggtgcactcacagcctgggggaggg 440
Query: 246 ggctgtcaagagcgactattgggttcttctttcctttggagtctgaactcaacacttctc 305
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ggctgtcaagagcgactattgggttctcctttcctttggagtctgaactcaacacttctc 500
Query: 306 aaggtaacagctgcctgactgggtaggactttacacttcagacccttgagagaaaggtaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtaacagctgcctgactgggtaggactttacacttcagacccttgagagaaaggtaa 560
Query: 366 gattgtcaaatggcagaaatgatggtaaccaggaggcacaattcctatggtacagaaaat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattgtcaaatggcagaaatgatggtaaccaggaggcacaattcctatggtacagaaaat 620
Query: 426 acaatctcaacagcaaccagaaaatagaactccaagggtaaccaggggatacaacgcacg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaatctcaacagcaaccagaaaatagaactccaagggtaaccaggggatacaacgcacg 680
Query: 486 tggtaactgcccactacaaccctgacagtaaacagtgtgcaaaaccgacagcaacc 541
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tggtaactgcccactacaaccctgacagtaaacagtgtgcaaaactgacagcaacc 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 936
Length adjustment: 10
Effective length of query: 531
Effective length of database: 926
Effective search space: 491706
Effective search space used: 491706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_g20.g1 MSMg01no402_g20.g1 CHROMAT_FILE:
MSMg01no402_g20.g1 PHD_FILE: MSMg01no402_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:19 2005
(492 letters)
>mm_chr6_87276587_87277478
Length = 892
Score = 774 bits (400), Expect = 0.0
Identities = 430/456 (94%), Gaps = 25/456 (5%)
Strand = Plus / Minus
Query: 1 ttgctcggatgagagaggccaatgtgatgtggaggagcagagctggtgtagcagcaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgctcggatgagagaggccaatgtgatgtggaggagcagagctggtgtagcagcaaggc 372
Query: 61 catttcttgcccatcagtgttgacaaatcttatgttgtgcacacacagaccagccatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catttcttgcccatcagtgttgacaaatcttatgttgtgcacacacagaccagccatgat 312
Query: 121 gctcactaccttggctcctttcccatcaagactccagaaggaaccatgtgtgcttcgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gctcactaccttggctcctttcccatcaagactccagaaggaaccatgtgtgcttcgtgc 252
Query: 181 aggataggggaaaaccaagcctcactcataggggttatgaaggccaatgtagaatcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aggataggggaaaaccaagcctcactcataggggttatgaaggccaatgtagaatcagaa 192
Query: 241 aactccagtttcaaactcaatgtttgaccaaacgttatgagcttgggatattaaatcagt 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 191 aactccagtttcaaactcaatgtttgaccaaacattatgagcttgggatattaaatcagt 132
Query: 301 taatctctctgaagcttggtttgctctcttaataaaatgggcattaaaatttattctcac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 taatctctctgaagcttggtttgctctcttaataaaatgggcattaaaatt--------- 81
Query: 361 agaaattctcacagaatattctcacagaaatgttctaaagattaaaatctttcaccagca 420
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ----------------tattctcacagaaatgttctaaagattaaaatctttcaccagca 37
Query: 421 tttggcaaatgcataccagatgatgagtgataaaga 456
||||||||||||||||||||||||||||||||||||
Sbjct: 36 tttggcaaatgcataccagatgatgagtgataaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
