BAC Information

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BAC

Clone NameMSMg01-402H22
Chromosome6 (Build37)
Map Location 117,738,737 - 117,738,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370
Downstream geneEG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402H22.T7 (MSMg01no402_h22.b1)MSMg01-402H22.TJ (MSMg01no402_h22.g1)
ACCAG501628AG501629
length755789
length of high quality
(start - end)
244 (76 - 319)242 (81 - 322)
definitionCHROMAT_FILE: MSMg01no402_h22.b1 PHD_FILE: MSMg01no402_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:24 2005CHROMAT_FILE: MSMg01no402_h22.g1 PHD_FILE: MSMg01no402_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCAATAATTTGCNGGCGCTATACGAATCACTATTTCCAGAGGATGCG
CGGAATTCCAAAAATTCCCAGCAAAACCATCAAGTTAACTTCTCAAAAAA
TGAAATACAAATGATCAATAAATACTTTTAAAACTGTTCAACATCTTTAG
CCATCAGAAACATTCAAATTGAAACTGCTTTGGAATTTCATCTCACCCCA
GTCAGAAACACTATCATCAAAATAAACATATGGTGGGGAGGGGTGGTACT
TACATACTACTGATACAAAGGTAAATTGGAGACACCAGTTTGGAAATCAG
TATGGAGGTTTCTTAAGATTTTTTTACTGGAACTACTACATGTTCCCACT
ACACCACTTTTCTAAGTATATACAGAAAGGATTCTTAACTCAGCATACCA
CAGCGATGTTTGCACAACCATGTTTAATTGCTGTACTACTCACATTAGCA
ATATATAGAACCAGCAGGTTCCAGTTAAAGCAATGGATAGAGAAAATGTG
CCATGTGTAAGCAATGAATGTTTTTCACGTCTAAAGTAGAATTATAGCTC
AGCTTATTTTGGTGAAATGAATACAACAGAACTTGGTAACCTAGATAATC
CTGACTCCAAATGACCAATGCCATACTTCTTTTTTCTATATAAAAATCCA
TATTTATATTTTATTAACGTCCTTGAAGAAAATTACCAACCTTTTACATA
ATTTTTCCCTCGAAATTTCTTATAAAGTATAAGGCATCTACACTTCTCTT
GTTTA
NCCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGGAAATGGGGGCTTG
GGGATACTGGCAAAAGTTTTCCTTTGTAACAGTAAACAAGGCTCCATTTT
CTCTGCTATTCACATGTCATCTTTCCCCCTGGCTTTTAATCATCCTGCAG
ATGGACTCACAAAGTCCGGATGGGCAGGCACGGGGCCATTTCTGTGTGTG
GACACACACAGGCCCTGTGAGCAAGCTCAAAGTCCCAAGGGAGGCAGGCT
CCGAGGGGACCCAGGGTCAGGTGTTTTATCCTGAGCACTGTCTGCTATTT
CATGACTACTTAGTGATCCAGATAAACACATGGTACTCCTGCTCAGTTTC
AGCAGTCTTGCTAAGCTGTGTGTGTGTGTGTGTGTGTGTGTGCCCCCCCA
TATATTTGTGTGCACCAAATCGCTTGTTTCTGTCTTGCATATTAACGCCA
TCACAAATTTTCTTTTTTCTCTTTTGCTGGTTTTTTTTAATTCATAACAG
CTTCCCTTTCTACCTTATTTATTTCTCTATATTTTATCTCATTATTGTTT
ATTTTCCTTACTTTACTATTTTCTTCCCCCCTCTTTTTCTTCATCCTCCA
CTTTTCTCTTCTTATTTTACTTCTCTCTTTTTTTTCATCTTCCCACCCTC
TCTTTTTCTCTTCTTCTTGTTCTCCTCTTCACCTCATCTTTCTTCCTATC
TTTCTTCACTCTTTCTCCTATTCCTTCCTTTTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_h22.g1 MSMg01no402_h22.g1 CHROMAT_FILE:
MSMg01no402_h22.g1 PHD_FILE: MSMg01no402_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:24 2005
         (242 letters)



>mm_chr6_117738537_117739178
          Length = 642

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagggaaatgggggcttggggatactggcaaaagttttcctttgtaacagtaaacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 tttagggaaatgggggcttggggatactggcaaaagttttcctttgtaaaagtaaacaag 383

                                                                       
Query: 61  gctccattttctctgctattcacatgtcatctttccccctggcttttaatcatcctgcag 120
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 382 gctccattttctctgctattcacatgtcatctttccctctgccttttaatcatcctgcag 323

                                                                       
Query: 121 atggactcacaaagtccggatgggcaggcacggggccatttctgtgtgtggacacacaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 322 atggactcacaaagtccggatgggcaggcacggggccatttctgtgtgtggacacacata 263

                                                                       
Query: 181 ggccctgtgagcaagctcaaagtcccaagggaggcaggctccgaggggacccagggtcag 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 ggccctgtgagcaagctcaaagtcccaggggaggcaggctccgaggggacccagggtcag 203

             
Query: 241 gt 242
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)