Query= MSMg01no403_e12.b1 MSMg01no403_e12.b1 CHROMAT_FILE:
MSMg01no403_e12.b1 PHD_FILE: MSMg01no403_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:30 2005
(534 letters)
>mm_chr6_87330708_87331641
Length = 934
Score = 615 bits (318), Expect = e-180
Identities = 321/322 (99%)
Strand = Plus / Minus
Query: 5 gaattcaaaatattgctgaattcattcattgagtcaagaatcctagcaggtaattctgta 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcaaaataatgctgaattcattcattgagtcaagaatcctagcaggtaattctgta 467
Query: 65 atgaagtaatggggtctccatcttctaaccccagcatctatgaatgaacagaccatcttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atgaagtaatggggtctccatcttctaaccccagcatctatgaatgaacagaccatcttc 407
Query: 125 tcccctcggatgagcaactggagtgtgtataacacacagggttttagcactccgcccctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcccctcggatgagcaactggagtgtgtataacacacagggttttagcactccgcccctg 347
Query: 185 cctcctttggcaggcaggctccagatacagctgatcttccctgcctgttatgacctgtgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cctcctttggcaggcaggctccagatacagctgatcttccctgcctgttatgacctgtgg 287
Query: 245 ccttgtccagcatttgagaccttctggtccaggctccatctttgctcatgaccttgggtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccttgtccagcatttgagaccttctggtccaggctccatctttgctcatgaccttgggtc 227
Query: 305 tgagcatccctggattaaaagg 326
||||||||||||||||||||||
Sbjct: 226 tgagcatccctggattaaaagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_e12.g1 MSMg01no403_e12.g1 CHROMAT_FILE:
MSMg01no403_e12.g1 PHD_FILE: MSMg01no403_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:30 2005
(398 letters)
>mm_chr6_87121070_87121863
Length = 794
Score = 710 bits (367), Expect = 0.0
Identities = 389/399 (97%), Gaps = 6/399 (1%)
Strand = Plus / Plus
Query: 1 cattgagtctctggaggatctgaagagatgaagggtggtaaaatgtggctgctctcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgagtctctggaggatctgaagagatgaagggtggtaaaatgtggctgctctcttcc 260
Query: 61 ccttcagtgacacacttttttttt-agctcctcccccacttgggcccccatacaaggtgt 119
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct: 261 ccttcagtgacacacttttttttttagctcctcccccacttgggccctcatacaaggcgt 320
Query: 120 tctctctgaccagaaggccagcccctcccttcactgcaacttcatcctttttgtcctagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctctgaccagaaggccagcccctcccttcactgcaacttcatcctttttgtcctagc 380
Query: 180 caggtgggcctttctctttcaaacccttccctgagccccaatggcttgggctaaatctcc 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 caggtgggcctttctctttcaaacctttccctgagccccaatggcttgggctaaatctcc 440
Query: 240 ttgttctatggtctcagagaaccccaaactccccttacactatttaccacttgaaactgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttctatggtctcagagaaccccaaactccccttacactatttaccacttgaaactgt 500
Query: 300 gattctgtgaactttcccaactactctactctactgtacactgaacagcgcaggggctct 359
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 501 gattctgtgaactttcccaactactctact-----gtacactgaacagtgcaggggctct 555
Query: 360 cccagctccagctgtcccatctgcttggcctggtgcctg 398
|||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cccagctccagctgtcccatctgcttggcctggtgcctg 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 794
Length adjustment: 9
Effective length of query: 389
Effective length of database: 785
Effective search space: 305365
Effective search space used: 305365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
