BAC Information

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BAC

Clone NameMSMg01-404B06
Chromosome6 (Build37)
Map Location 20,751,064 - 20,751,247
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404B06.T7 (MSMg01no404_b06.b1)MSMg01-404B06.TJ (MSMg01no404_b06.g1)
ACCAG502836AG502837
length810802
length of high quality
(start - end)
192 (36 - 227)66 (67 - 132)
definitionCHROMAT_FILE: MSMg01no404_b06.b1 PHD_FILE: MSMg01no404_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:36 2005CHROMAT_FILE: MSMg01no404_b06.g1 PHD_FILE: MSMg01no404_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGC
AAAGTGTGAAGTCCCAGTTCATGCAGTAATGTCACTGGACCACAGTGGAC
ACACATATTCTGTTAAACATTGTTCCATGCGTTTTCTTTTTAAGGGGTAT
TTTGTTCAAATTAATGTTTAAATCAGACAGTGTGAATCAATCAAACTGTC
TGCTATAAGGGGGGTGGTGGGGGTGGNNNCCCNNCNNNNNNNTCTCTTTT
TCCTCCCTTTCCCTCCTTTTTCTTTTCTTTTTCCCCCTTCTTTTTTCCCA
CCTCTTTTTTTTTTCTCTTCTTCTCCCTTCTCTTTTTCCCCCCCTTTTTT
TTCCCCCCTAATTTCTCCTTCACATATCCCACCCCCCCATCTCTCTTCTA
TTACACCCCCTATCCATTTCCCACTTTTACCCTATCTTTTTAAATATTTA
TCTTTATTCCCCCCTCTTTATTTTATTTCTTATTCCACCCTACTTTTTTT
TTCTTCTTATTTTTTCATTCCTCTTATCTAATAAAAAAAATTATTCTTTT
TCCATTACTTCTTTTTATCCTCCCCCCCCCTTTATATTATTTTTTTTTCC
CCACATCTTTTTCTTTTTATAACAAAAATACATATTTTCAATCTTTTAAT
TTCCCCCCCCTTCTTATATACTTTATTATTTTAATTTTTCCCCCCCTCTT
ATTTCCTCACACTCCTTATTTACTTACATTTATTTCTCCCCTCTCCTTTT
TTTTTATATCTTATTTTCTTTTTTTTATTTCCTCCCACCCCTCCTTATTT
TTTTTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGGTTTAGGTCTATACTCCATTTTTTAATTGGT
TTGTTTGTTTGTTTTTTGTTTTTTTTTTGCCCGCCCGCCCCCCCCCCCCC
CCTCCTCTCTCCCTGCCCTTCTCTCTTTTCTCCTCCTTCCCCCTCCCTCC
CTCTCCCCCCCCCTCCCTCTCCCTCTCCTCCCCTCCCCCTTTCTCCCCCC
CTTCCTTCTGTCCCTCTCTTCTTTCCCCCCCTCCCCCCTTCCTTTTCCTT
TCTCCCCCTTCCCCCCCCCTTCTCTTCCCCTTTCTCAACTTTCCCTTTAC
CTCTTCCATTTTTACCCCCCCTTTTCCCTCCCCCCCCTCTCTTCCTTTCC
CCTTTTCCCCCTCTTTCTTTCCCCCCACCCCCTTTCTCCCCCCCTTTTAC
CCCCCCTTCCCCCTCTTCTTCCCCCAATTATTAAAATATACCCCCCCTAA
ATAAACCCCTTTATACCCTAATAATACAACCACTTTACAAACAAAAAACA
CCACCCTAAAAACCTCAATAAAATCACCCCTTCACAATATAAAAACTACT
CCCCCCCCACAAAAATACCCCAATCTTAAACAACCACCCTCATCCCACCC
CCCCCTATAATTAAAATAATATCATTCCCACCATCTTTTCTATATTCTCC
TCTATTATTATTAAATAAACTTCCCATACCCCACCCCTTCTAAATTAATT
ATAACCCCCTTACAATATTACCTTTCAAATCAAAACCACTCCCTCACTCA
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_b06.b1 MSMg01no404_b06.b1 CHROMAT_FILE:
MSMg01no404_b06.b1 PHD_FILE: MSMg01no404_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:36 2005
         (192 letters)



>mm_chr6_20750870_20751461
          Length = 592

 Score =  335 bits (173), Expect = 1e-96
 Identities = 183/187 (97%), Gaps = 3/187 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagcaaagtgtgaagtcccagttcatgcagtaatgtcactggaccacagtgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 378 gaattcagagcaaagtgtgaagtcccagttcatgcagtaatgtcactggaccacagtggg 319

                                                                       
Query: 65  cacacatattctgttaaacattgttccatgcgttttctttttaaggggtattttgttcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacacatattctgttaaacattgttccatgcgttttctttttaaggggtattttgttcaa 259

                                                                       
Query: 125 attaatgtttaaatcagacagtgtgaatcaatcaaactgtctgctataaggggggtggtg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||
Sbjct: 258 attaatgtttaaatcagacagtgtgaatcaatcaaactgtctgctataaggggg-t--tg 202

                  
Query: 185 ggggtgg 191
           |||||||
Sbjct: 201 ggggtgg 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)