Query= MSMg01no404_d13.b1 MSMg01no404_d13.b1 CHROMAT_FILE:
MSMg01no404_d13.b1 PHD_FILE: MSMg01no404_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:48 2005
(506 letters)
>mm_chr6_28789195_28790101
Length = 907
Score = 835 bits (432), Expect = 0.0
Identities = 487/514 (94%), Gaps = 20/514 (3%)
Strand = Plus / Plus
Query: 6 gaattctttctgttccctttttattatttagaatcacttactcttggcattgctcctaat 65
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctttctgttatctttttattatttagaatcacttactcttggcattgctcctaat 260
Query: 66 ttagaacttctaattcttctatttc--ta------tttttctatttctaacagttaatgt 117
||||||||||||||||||| || | || |||||||||||||||||||||||||
Sbjct: 261 ttagaacttctaattcttc-at--ccataaagtggtttttctatttctaacagttaatgt 317
Query: 118 aattctgagacatgatctcactctataaccctggatgccctagaactcactgcgtagata 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aattctgagacatgatctcactctataaccctggatgccctagaactcactgcgtagata 377
Query: 178 aggctggtctcgaacatgaaaagatctgcctggcaggtgccaccacacccagcagttaat 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 378 aggctggtctcgaacatgaaaagatctacctggcaggtgccaccacacccagcagttaat 437
Query: 238 attagcgtaatagtttgtcaacatctcacatgacccctta-----tttatttagaactgc 292
||||| ||| ||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 438 attagtgtactagtttgtcaacatctcacatgacccc--agaacat--atttagaactgc 493
Query: 293 taaggtaatctctgttagattagtaaaaacctgtactgtttgtaatctattctccacagc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 taaggtaatctctgttagattagtaaaaacctgtactgtttgtaatctattctccacagc 553
Query: 353 aactaaagtgatcgtggtgactttacgtcagattatgttattgatttacttaaaatgttc 412
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aactaaagtgatcgtgttgactttacgtcagattatgttattgatttacttaaaatgttc 613
Query: 413 cgttttcctcataaattgaatagcaacggaaatgcctaccacagctcctcagcctttatc 472
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cattttcctcataaattgaatagcaacggaaatgcctaccacagctcctcagcctttatc 673
Query: 473 cctttccttcaacctcagtcctgacatttatcaa 506
||||||||||||||||||||||||||||||||||
Sbjct: 674 cctttccttcaacctcagtcctgacatttatcaa 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_d13.g1 MSMg01no404_d13.g1 CHROMAT_FILE:
MSMg01no404_d13.g1 PHD_FILE: MSMg01no404_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:48 2005
(245 letters)
>mm_chr6_29011427_29012071
Length = 645
Score = 445 bits (230), Expect = e-129
Identities = 239/242 (98%)
Strand = Plus / Minus
Query: 1 catgttcctggagaccctgctctatttccctgtatcctatgtgcctctagagggatacag 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 catgttcctggagaccctgctctatctccctgtatcctatgtgcctctagagggatacag 383
Query: 61 ggtgtggggtgcaacaatgactggtgctctgtaaagggaattgtctccggcagccatctc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggtatggggtgcaacaatgactggtgctctgtaaagggaattgtctccggcagccatctc 323
Query: 121 tgcatcccacatgggtcactcagacatgcgaggcatctgcccggggctgatggacaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgcatcccacatgggtcactcagacatgcgaggcatctgcccggggctgatggacaagaa 263
Query: 181 tttattacagcatccctggctctgtccttggctctttgaactttttcctggaacacgggg 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 262 tttattacagcatccctggctctgtccttggctctttgagctttttcctggaacacgggg 203
Query: 241 gg 242
||
Sbjct: 202 gg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
