BAC Information

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BAC

Clone NameMSMg01-404H10
Chromosome6 (Build37)
Map Location 54,730,589 - 54,730,938
singlet/doubletsinglet
Overlap genenone
Upstream gene1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404H10.T7 (MSMg01no404_h10.b1)MSMg01-404H10.TJ (MSMg01no404_h10.g1)
ACCAG503126AG503127
length785796
length of high quality
(start - end)
353 (60 - 412)335 (66 - 400)
definitionCHROMAT_FILE: MSMg01no404_h10.b1 PHD_FILE: MSMg01no404_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:09 2005CHROMAT_FILE: MSMg01no404_h10.g1 PHD_FILE: MSMg01no404_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCGCTTAACGACTCACTATTCCTAGAAATCCGCGGAATTCTAAAGATT
CCGATAAGAATTTGAAATCTCTCATAAGTTATTAGATAGTAATTTTAAGC
AACGCATAGACACTAGTCACTGGGATTTAATCATAGGGCAATGTTATGTT
GGAAGTAATTTCCCCTCGTGGGCCCTTCCCGATCTTCTGGCCTCTTCCCT
CTTTCACTTTCACACAGACTCACACATATAACAATGTGGAAGCCAGGATT
TGCATGGGAGAGAGAACTGCTTGTGATTTTTTGGCTTGGCCTTGGTTGCC
TAACCTATGTATAGTATTTTCCAGTTCTATCCACTTTTCTATAAATTGTA
TGATTTCATTTCTCTTTATACCTGAATAGAAAACTATTGTAATCATGTAC
CATATTTTCATTAGTGATGGACAACTAGGCTTCTTCTTTTTCCTGGCTAT
TGTAAAGACAGCAGCAAAAACCATGATGAGCTAGCACCTCTATTATAGAT
AACACAGGAGCTCTGCCATATGAAATATCTATTTTAAGCTTTCTGAAGAA
CCTTATTACTGCACCTCCCTATTGTTTGTTTCTTTGCCATTTCCAATCTG
TAAAAAATGGGTTGTCCTTTTTTTTTTATACTTTCCCCCCCTTTTGTTGC
TTTTCTTTTTTTCTTTATCCCCCCCTCTTTTCTTCTCCCACCCTTTTTTT
TTTCTCATTTCACCCCCTCTCTCCTTTTTATTTATATCATTCTTTTTTTA
ACTATCCCCTCCCTCCTCCTATGTTTTTATCTATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTGTCTTCCTTCTATCAAAGCTGACACTCCCGTC
CCCACTCCTACTGCCATACCTATTCCCATGAATGCAGCCAGGGTTAAAGT
AATTGGTTCTCTTTTTGACCGCCGGCCCGCATAGCTTTCTTCTAAACTGG
ATGCAGGGTGATAATATACACGGGGTAACAGCTGGATCATGACACAAAAA
TCATGAGATGAATTAAAAACCTTAGTTGATACACAGGGAGTAAGTCCTGT
ATTGCAAGCCCACCATCCAACCGGGGAAGGTACAAGATAGTAATCAGCTT
CCGTTCTGGACACGGACTGAATTTGTCCGCATAGGTGTTTGTGAGTGGAA
GGTGGTGTACCTATACAGAGACCTGTATTCCTCGTGCATACTTCTGTTAT
GGCCAGTTTTTGTTCTTGTCCCCACTATCATCCCTTCCGGCTGTCTATCC
CCGCTTGTATTTTCCCCGCCCTAAATTCCCTTTATTTCCATGTTATTACC
CACTTAAACTCTATTTCCACCCTCTATTATTTTTTTTATTTTCTCCTATT
TTATTACTTCCCCCCCCCTTTTTTCTCCCTATCCTTTATCCCCCCCTCTC
CCCCCCTCTTATTTATTTTTTTCCATTCTATTTTTTTATTTTACTTCTTA
TTATTATTTTCTTATTCTCTTGTTCCCCTATCATCCATTTATATTATTCC
TCCTTACGTATTCTTATTATTTTACCATTCTCTCCCTTTCCCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_h10.b1 MSMg01no404_h10.b1 CHROMAT_FILE:
MSMg01no404_h10.b1 PHD_FILE: MSMg01no404_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:09 2005
         (353 letters)



>mm_chr6_54730389_54731141
          Length = 753

 Score =  586 bits (303), Expect = e-172
 Identities = 340/353 (96%), Gaps = 3/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgaaatctctcataagttattagatagtaattttaagcaacgcatagacactagtca 60
           ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct: 201 atttgaaatctctcataagttatcagataataattttaagcaacacatagacactaatca 260

                                                                       
Query: 61  ctgggatttaatcatagggcaatgttatgttggaagtaatttcccctcgtgggcccttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ctgggatttaatcatagggcaatgttatgttggaagtaatttccccttgtgggcccttcc 320

                                                                       
Query: 121 cgatcttctggcctcttccctctttcactttcacacagactcacacatataacaatgtgg 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggtcttctggcctcttccctctttcactttcacacagactcacacatataacaatgtgg 380

                                                                       
Query: 181 aagccaggatttgcatgggagagagaactgcttgtgattttttggcttggccttggttgc 240
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 381 aagccaggatttgcatgggagagagaactgcctgtgcttttttggcttggccttggttgc 440

                                                                       
Query: 241 ctaacctatgtatagtattttccagttctatccacttttctataaattgtatgatttcat 300
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaccta-gtacagtattttccagttctatccacttttctataaattgtatgatttcat 499

                                                                
Query: 301 ttctctttatacctgaatagaaaactattgtaatcatgtaccatattttcatt 353
           ||||||||| |||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 500 ttctctttacacctgaata--aaactattgtaatcatgtaccatattttcatt 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)