Query= MSMg01no404_j03.b1 MSMg01no404_j03.b1 CHROMAT_FILE:
MSMg01no404_j03.b1 PHD_FILE: MSMg01no404_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:17 2005
(278 letters)
>mm_chr6_112673892_112674569
Length = 678
Score = 497 bits (257), Expect = e-145
Identities = 270/277 (97%), Gaps = 6/277 (2%)
Strand = Plus / Plus
Query: 5 gaattcatactccatttc---accgaattatataactgtataccagttttaaaataaaaa 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatactcca---ccctaccgaattatataactgtataccagttttaaaataaaaa 261
Query: 62 atcattgcccaaagggaaatgactctctacagaacatataccgtgcatcctagagtgaca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atcattgcccaaagggaaatgactctctacagaacatataccgtgcatcctagagtgaca 321
Query: 122 ggaagaccgctttcctcccagtattatgatctaaaaggctcgtgtggggaaaatgtagat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaagaccgctttcctcccagtattatgatctaaaaggctcgtgtggggaaaatgtagat 381
Query: 182 ggcatgtcattgtctctgcagcctcattaaaaagagagtacctcaggagtcagagctgtg 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggcacgtcattgtctctgcagcctcattaaaaagagagtacctcaggagtcagagctgtg 441
Query: 242 gcacacctcagtgagctccttgtctaccaatccaggg 278
|||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcacacctcagtgagctccttgtctaccaatccaggg 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_j03.g1 MSMg01no404_j03.g1 CHROMAT_FILE:
MSMg01no404_j03.g1 PHD_FILE: MSMg01no404_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:17 2005
(526 letters)
>mm_chr6_112881620_112882545
Length = 926
Score = 922 bits (477), Expect = 0.0
Identities = 510/521 (97%)
Strand = Plus / Minus
Query: 6 gaattcttgccctacagcacactggaacctcgggtggtgggtcacagaaacttgcatctc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattcttgccctacagcacactggaacctcgggtggtgggtcacagaaacttgcatctc 667
Query: 66 aaacttcccaggttgcttagtctggaacagaacagccgaactctgtaaaccgagttgggg 125
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 666 aaacttcccaggttgcttagtctggaacagaacagccgaactctgcataccgagttgggg 607
Query: 126 tggtcacgcccatttgtctgtcttcacactggcaggtggaggcttttactatggtgcctt 185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tggtcatgcccatttgtctgtcttcacactggcaggtggaggcttttactatggtgcctt 547
Query: 186 ttcgggagcctgggcaccactgggaaccaaactgcagccttggccttggtttgagccttg 245
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 546 ttcaggagcctgggcaccactgggaaccaaactgcagcctcagccttggtttgagccttg 487
Query: 246 cggcccttggccatgtatccacatatctccttcccaagcttggggtggtgagagcggcaa 305
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cggcccttggccatgtagccacatatctccttcccaagcttggggtggtgagagcggcaa 427
Query: 306 attgttggaccctgtgattgcgatcctttggtatctggggctgagcctccttaggcttcc 365
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 426 attgttggaccctgtgattgtgatcctttggtatctgggactgagcctccttaggcttcc 367
Query: 366 ctggggccctgatggcctcttcttggcattcagtgccttcacgttgtttgctagcatgtt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctggggccctgatggcctcttcttggcattcagtgccttcacgttgtttgctagcatgtt 307
Query: 426 cttcaggcccttcttgtgcttctgggcaaaatgcatgttccttgggaacttgggtcctcc 485
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 306 cttcaggcccttctcgtgcttctgggcaaaatgcatattccttgggaacttgggtcctcc 247
Query: 486 accttaacagttcataactgttgtatagaggtttcttggtg 526
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 accttaacagttcataactgttgtatagaggtttcttggtg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
