TTGCCGTCGCCAAACGAAACCTACATCGATAATACCGCGGNAANCACTGG
GTTGCCTAAACCATCCTCTAACTTCTCCTCAAGTGCTATAATTAAAAGCA
TAGGCTACCATCCCAGCTCTTCAAATGCTTTACTTGACAAAAGGACTATG
TTGCTTTCCCAGTTCATAGGCAAGTGCATGCCCTCCTTCCACAGGTGTTT
ATGGATTGGCTCCTTTTGCAAAAAGCAAGTTGCTAGCTTGGTTTTCAGTG
CTTAAGCAGACTTATCTTGTCCCTGGAGGCAGGTAGCCCTAAGTGGAGAG
CAACTGTGTTGTTATTTCTTTAGCAAGCAGATCAGGAAACCAGGAAACAA
AGATGTGAGGTCAGCTGTTCACAGTGGTGACATTAGCACGGGTGGTTCTC
AACCTATGGATCTTGATCCTTTTCAGGGTCCAATGGCCCTTTCACAGGTG
TCACCTCAGATTGCCAGAAAACATAGATATATACATTATGATTCTTACTG
TCATTGAGTTACAGTTATGGAAGTAACTACAACAACTAATTTGTGGTGGG
GAGTCCCCTCTAAATGAACTGCCGTTTATTGCATCAATTCAAAACATTTA
TGTTCTCCTCTTAATTTCACCAAAATTGGTCTACTCTTGGTTTTTATATT
GCCCCATAATATTCTCTTTTTATCCGTAATCATCAATAAATAAACATCTT
TTTTTTATCCCATTTTATCCCACCCCCTCTTCACCCCCAACTTTTCTCTT
TTTCCCCTCCCACCCTCTCTTTTTCCCCTCCTCTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACGAAGCTCTTCCAAATGGGACCTTAGCCAAAG
GATATTAGTTACTGAAGGGGGCTCATTAGTGGCTGGGCTCATTTCTAAAG
TGGCCCAGTGGCATTGTTCCCAAAGAAAAAGGGCCAGTAAGCCCAGATCA
CTGTTCTGTTGCGGACTGTGTATTTACATATTCACTGTCTACCTTTCACA
GGAACAAATCTTTGTCCTCGTTCCCAGCTGAAAGGTGACCTCCGGCGTGA
AACTGGATGAGTATCTGCTTGTTTATCTGCAAAAGGGGAGTCATGAGGTC
CCTACACCATCACACGCTGTGAGGATGAAATGGAGTTGGCACAAGGCACC
TAACTGCAGGCTTACCTATGCTGTTCTTACCATCATCGTATCCAGTAGTA
AGATGACTCCCAAGTCACCCTCCCACTCAGGAGAGCTTGTCACCTGCCAA
TCGCAGGTATCGCCACGTTTTTCAGCTTTTTTGAATCAATCTCAGGGACA
GCTTTCTGTGTACTTTGGTCATACCGTGGATCTTTCAATTCCCAACTTTA
TTTTACTGCCTCCTTTTAAAAAATCCTCCCTTTCACCCCCCCCCCCTTTT
ATGCCCCTAATCTATATTTATAAATTTTGCTAAATTCCCCTCCTCCTTCT
ATAAAGTTGTCCTCCTTTCTGTTCTTTCCAGAAAATACATTTGTTACTTT
ATCCGCCCCCCTTTTCTCTATTATCAATTTT

Query= MSMg01no404_k09.b1 MSMg01no404_k09.b1 CHROMAT_FILE:
MSMg01no404_k09.b1 PHD_FILE: MSMg01no404_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:24 2005
         (245 letters)



>mm_chr6_97402475_97403119
          Length = 645

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctaacttctcctcaagtgctataattaaaagcataggctaccatcccagctcttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctctaacttctcctcaagtgctataattaaaagcataggctaccatcccagctcttcaaa 385

                                                                       
Query: 61  tgctttacttgacaaaaggactatgttgctttcccagttcataggcaagtgcatgccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgctttacttgacaaaaggactatgttgctttcccagttcataggcaagtgcatgccctc 325

                                                                       
Query: 121 cttccacaggtgtttatggattggctccttttgcaaaaagcaagttgctagcttggtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 324 cttccacaggtgtttatggattggctccttttgcaaaaagcaagttgctagcttggggct 265

                                                                       
Query: 181 cagtgcttaagcagacttatcttgtccctggaggcaggtagccctaagtggagagcaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagtgcttaagcagacttatcttgtccctggaggcaggtagccctaagtggagagcaact 205

               
Query: 241 gtgt 244
           ||||
Sbjct: 204 gtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no404_k09.g1 MSMg01no404_k09.g1 CHROMAT_FILE:
MSMg01no404_k09.g1 PHD_FILE: MSMg01no404_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:24 2005
         (374 letters)



>mm_chr6_97219263_97220036
          Length = 774

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgaagctcttccaaatgggaccttagccaaaggatattagttactgaagggggctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgaagctcttccaaatgggaccttagccaaaggatattagttactgaagggggctcat 260

                                                                       
Query: 61  tagtggctgggctcatttctaaagtggcccagtggcattgttcccaaagaaaaagggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtggctgggctcatttctaaagtggcccagtggcattgttcccaaagaaaaagggcca 320

                                                                       
Query: 121 gtaagcccagatcactgttctgttgcggactgtgtatttacatattcactgtctaccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagcccagatcactgttctgttgcggactgtgtatttacatattcactgtctaccttt 380

                                                                       
Query: 181 cacaggaacaaatctttgtcctcgttcccagctgaaaggtgacctccggcgtgaaactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaggaacaaatctttgtcctcgttcccagctgaaaggtgacctccggcgtgaaactgg 440

                                                                       
Query: 241 atgagtatctgcttgtttatctgcaaaaggggagtcatgaggtccctacaccatcacacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagtatctgcttgtttatctgcaaaaggggagtcatgaggtccctacaccatcacacg 500

                                                                       
Query: 301 ctgtgaggatgaaatggagttggcacaaggcacctaactgcaggcttacctatgctgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgaggatgaaatggagttggcacaaggcacctaactgcaggcttacctatgctgttc 560

                         
Query: 361 ttaccatcatcgta 374
           ||||||||||||||
Sbjct: 561 ttaccatcatcgta 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)