BAC Information

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BAC

Clone NameMSMg01-404L02
Chromosome6 (Build37)
Map Location 146,794,453 - 146,915,636
singlet/doubletdoublet
Overlap gene1700023A16Rik, Ppfibp1, 1700034J05Rik
Upstream geneBhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2
Downstream gene2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404L02.T7 (MSMg01no404_l02.b1)MSMg01-404L02.TJ (MSMg01no404_l02.g1)
ACCAG503300AG503301
length762756
length of high quality
(start - end)
331 (60 - 390)371 (67 - 437)
definitionCHROMAT_FILE: MSMg01no404_l02.b1 PHD_FILE: MSMg01no404_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:27 2005CHROMAT_FILE: MSMg01no404_l02.g1 PHD_FILE: MSMg01no404_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,915,306 - 146,915,636)(146,794,453 - 146,794,823)
sequence
CGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTACCT
TGTTCCCAAGCATGCTGTTGTTACCAAGGAGAGGTAATAAGTATGTATGT
CCTAAAATTCTAGCTCACGTTTGTGTGTTGGAGACTTCTGTAACAAAACT
ATTTCACTTTTACCCCGACCTTTAAACTACAGGATTTTCAAACACCTCCA
GACATGACATAGTGTCTTAAACAGGTTGTTTTTCTGCCGTAACCACAAGC
ACACTAAGAGCTCCCCAAATATTTACAAATCAAATAATGAGACGCTTGCT
GTACTAGCTACCCATATGAGCACAAACACGGGCATGCACACTCCGAAGAC
AGAGCAGCCTCCTGCAGATGGAGAGCTGCGCTGAGTGTGAAGGGAGCACT
GACCATGTTAGCATGCACGGGGCATTAACATGCACTGCACAGGACAGTAG
TGTGTACTGCCCAGGTGTGCGCACTGTTCAGTGATGACTATAATGACCGG
CGACCAAGAACGATGTTTAAGTCTGCAAGGAATTATTGCTCACACTCATT
TCTTTGTTTGTTACGCCTACCCCTTTGTTTCTGCCTGCTGATATTTATCC
ACTTTTTTTTCCCCCCGTTCCTAATTATAATTTTTACCTTTTCCCCCCTC
ATTTTTTTTCCCCCCCCCGTTTTACTTCTCATCTACCGCCACCCCTTTTA
TTTATCTCAACTATTTCCTTTTTTTCTTATCCCGCCCCCCCCCCCTTATA
TATATATTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTGAGACGTTGCTCTAGCTGAAGGGGTTCTTG
ATTTTTAGTAGAGTCCAAATAGTCAAACCAGCCCTTAGTCAGAGGCACAA
ACACATCTGCCTTTCGGTTTATTACTGTGCTGAACGGATTCTTTGCCACT
TCGGGTCATCCTTCAGACACCCAGATTGTAGGCAGTTCTCACATCTATTC
TTTCCACCCCCGTGACAGTACATGAGCTAAGGCTGAGTGAATGCTGGTCC
CCAGGGATCTGCATTTTCAGGGCCCCCAGGGATCTGCAGAGTCAGGGCCC
TGTGAGCCTCTGCTCACACTGACATCTACCAACCAATCTGTGAACTTGGT
TTATATGCATTCCTGCTTAAAGACATATTTATTGTATATGTATCCAGGTT
TGGCCTTGAACTCATTTTGTAGCCCATAATGACCTTGGATTTGATCTCCC
TGTTTCCGCTTCCCAAATGTTGGTATTTCATGCCTGTTTCACCACACCCC
GCTCAATTCGTTGATTCGTTGTCCTTGAATTGTTTGCCCGCTATTCTTGA
CCTATATTTCTGCTCTTTCCCCCCTCTCTTTTTTTTTCTTTCGTTCCTCC
TATTTTTGTTTTTTCTATTACACCTTTAACAAGCCCTGTCCCCGTCTTAT
ATATATAATAACAACTCTTGTTTTTTACTTATTATAAATCCTCCTCTTTC
TCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_l02.b1 MSMg01no404_l02.b1 CHROMAT_FILE:
MSMg01no404_l02.b1 PHD_FILE: MSMg01no404_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:27 2005
         (331 letters)



>mm_chr6_146915106_146915836
          Length = 731

 Score =  640 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatgctgttgttaccaaggagaggtaataagtatgtatgtcctaaaattctagctcacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gcatgctgttgttaccaaggagaggtaataagtatgtatgtcctaaaattctagctcacg 472

                                                                       
Query: 61  tttgtgtgttggagacttctgtaacaaaactatttcacttttaccccgacctttaaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tttgtgtgttggagacttctgtaacaaaactatttcacttttaccccgacctttaaacta 412

                                                                       
Query: 121 caggattttcaaacacctccagacatgacatagtgtcttaaacaggttgtttttctgccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 caggattttcaaacacctccagacatgacatagtgtcttaaacaggttgtttttctgccg 352

                                                                       
Query: 181 taaccacaagcacactaagagctccccaaatatttacaaatcaaataatgagacgcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 taaccacaagcacactaagagctccccaaatatttacaaatcaaataatgagacgcttgc 292

                                                                       
Query: 241 tgtactagctacccatatgagcacaaacacgggcatgcacactccgaagacagagcagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgtactagctacccatatgagcacaaacacgggcatgcacactccgaagacagagcagcc 232

                                          
Query: 301 tcctgcagatggagagctgcgctgagtgtga 331
           |||||||||||||||||||||||||||||||
Sbjct: 231 tcctgcagatggagagctgcgctgagtgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no404_l02.g1 MSMg01no404_l02.g1 CHROMAT_FILE:
MSMg01no404_l02.g1 PHD_FILE: MSMg01no404_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:27 2005
         (371 letters)



>mm_chr6_146794253_146795023
          Length = 771

 Score =  687 bits (355), Expect = 0.0
 Identities = 367/371 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgagacgttgctctagctgaaggggttcttgatttttagtagagtccaaatagtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgagacgttgctctagctgaaggggttcttgatttttagtagagtccaaatagtcaa 260

                                                                       
Query: 61  accagcccttagtcagaggcacaaacacatctgcctttcggtttattactgtgctgaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagcccttagtcagaggcacaaacacatctgcctttcggtttattactgtgctgaacg 320

                                                                       
Query: 121 gattctttgccacttcgggtcatccttcagacacccagattgtaggcagttctcacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattctttgccacttcgggtcatccttcagacacccagattgtaggcagttctcacatct 380

                                                                       
Query: 181 attctttccacccccgtgacagtacatgagctaaggctgagtgaatgctggtccccaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctttccacccccgtgacagtacatgagctaaggctgagtgaatgctggtccccaggg 440

                                                                       
Query: 241 atctgcattttcagggcccccagggatctgcagagtcagggccctgtgagcctctgctca 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgcagggtcagggcccccagggatctgcagagtcagggccctgtgagcctctgctca 500

                                                                       
Query: 301 cactgacatctaccaaccaatctgtgaacttggtttatatgcattcctgcttaaagacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 cactgacatctaccaaccaatctgtgaacttggtttatatgcattcctgtttaaagacat 560

                      
Query: 361 atttattgtat 371
           |||||||||||
Sbjct: 561 atttattgtat 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)