Query= MSMg01no404_m18.b1 MSMg01no404_m18.b1 CHROMAT_FILE:
MSMg01no404_m18.b1 PHD_FILE: MSMg01no404_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:35 2005
(476 letters)
>mm_chr6_45304635_45305510
Length = 876
Score = 861 bits (445), Expect = 0.0
Identities = 463/469 (98%)
Strand = Plus / Minus
Query: 8 ttctcttgataatatcacactgtgcttctaaaaccatcacagttctatccatgccacgtc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttctcttgataatatcacactgtgcttctaaaaccatcacagttctatccatgccacgtc 500
Query: 68 tctcacatgttcatgcttccagtaaagatcacagaagtgttgagcatatgaaatttaatt 127
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 499 tctcatatgttcatgcttcctgtaaagatcacagaagtgttgaacatatgaaatttaatt 440
Query: 128 caacacttctaaaagtactcccatgattacaaagctgtctttcaggcattcatcctaaac 187
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 439 caacacttctaaaagtactcccatgattacaaagctgtctttcaggcatttattctaaac 380
Query: 188 tacagttggacactacaattagcaaatgacaaataatgattctattccctcagactccat 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tacagttggacactacaattagcaaatgacaaataatgattctattccctcagactccat 320
Query: 248 tacatagagctttctacttcaaaatatttaagtgattagtctgaatgaggttagtaacat 307
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 319 tacatagagctttctacttcaaaatatttaagtgattagtctgaatgacgttagtaacat 260
Query: 308 aaacactaaagtctcacatggtgtgattgtaaagatagattaaaataatccctaaataat 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaacactaaagtctcacatggtgtgattgtaaagatagattaaaataatccctaaataat 200
Query: 368 aaaataatatttttagtgaaaaaaaacaaaaaagagtggaatcctggcttggagaccttg 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aaaataatatttttagtgaaaaaaaacaaaaaagagtggaatcctggcttggagaccttg 140
Query: 428 atttaagattatttctgtcaatggccttcttgctatttcctttctattg 476
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atttaagattatttctgtcaatggccttcttgctatttcctttctattg 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_m18.g1 MSMg01no404_m18.g1 CHROMAT_FILE:
MSMg01no404_m18.g1 PHD_FILE: MSMg01no404_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:35 2005
(560 letters)
>mm_chr6_45145908_45146867
Length = 960
Score = 986 bits (510), Expect = 0.0
Identities = 549/564 (97%), Gaps = 5/564 (0%)
Strand = Plus / Plus
Query: 1 aatgaagaaatcagctctttttttacagtttcataaaattccattcaaacaagccaaatg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aatgaagaaatcagctctttgtttacagtttcataaaattccattcaaacaagccaaatg 257
Query: 61 agggcttggagagaaggagatacgtgcatgtctgtaaacaaataaaataataaataattt 120
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 258 aaggcttggagagaaggagatatgtgcatgtctgtaaacaaattaaataataaataattt 317
Query: 121 gaggtagtcagtttgaaataagtcattctctcttttgatctacaactttcattcaccacc 180
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct: 318 gaggtagtcagtttgaaataagtcattctctcttttgacctaaaactttcattcaccatc 377
Query: 181 tctcttttttctcttaatgatgtttc----ttattattctaatttcaataaaaatcactc 236
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 378 tctcttttttctcttaatgatgtttctgatttattattctaatttcaataaaaatcactc 437
Query: 237 aagagaataaagtgaaatgaataaatgataggaaaaatattgttgtaaacaatttctagt 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 438 aagagaataaagtgaaatgaataaaagataggaaaaatattgttgtaaacaatttctagt 497
Query: 297 tttctttttttattttcttattctttcttccaactttcccctctgttccttctctctgtc 356
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttc-ttttttattttcttattctttcttccaactttcccctctgttccttctctctgtc 556
Query: 357 tctgtatctctctctattttattctgccaaaataatttaaacattttataacctcattgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 557 tctgtatctctctctattttattctgccaaaataatttaaacattttataacctcatcgg 616
Query: 417 aaaatcatggtgctcatttcattttaaagcacaaaggcctatttgattgaccatttagat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaatcatggtgctcatttcattttaaagcacaaaggcctatttgattgaccatttagat 676
Query: 477 agcacctcccttttaatactctttcttcccacaactagcaattgccaatatcaagtaagt 536
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 677 agcacctcccttttaatactctttcttcccacaactagcaattgccaatttcaagtaagt 736
Query: 537 ttatatatgaaaaagtttcaagtc 560
||||||||||||||||||||||||
Sbjct: 737 ttatatatgaaaaagtttcaagtc 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
