Query= MSMg01no405_k02.b1 MSMg01no405_k02.b1 CHROMAT_FILE:
MSMg01no405_k02.b1 PHD_FILE: MSMg01no405_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:40 2005
(249 letters)
>mm_chr6_99097972_99098620
Length = 649
Score = 455 bits (235), Expect = e-132
Identities = 248/259 (95%), Gaps = 11/259 (4%)
Strand = Plus / Plus
Query: 1 tgtctaagaaaaaactgtgaccaaggcactgcacaggatcaagatcattatatgtatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgtctaagaaaaaactgtgaccaaggcactgcacaggatcaagatcattatatgtatttc 249
Query: 61 atatgtatttcatttgcatcctgcagggtcttatcttaaaagcaccttctggtttttt-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atatgtatttcatttgcatcctgcagggtcttatcttaaaagcaccttctggttttttgt 309
Query: 119 ---------ttttagtagagacccaatgttgctatggaaaccttgagatatacagaaaag 169
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttttttttttttagtagagacccaatgttgctatggaaaccttgagatatacagaaaag 369
Query: 170 caaaaaaagtaatggtaaacacacaagaatcctacaacgaaaccaaagagcaggggtcag 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caaaaaaagtaatggtaaacacacaagaatcctacaacgaaaccaaagagcaggggtcag 429
Query: 230 ggcacctccccacccaaca 248
|||||||||||||||||||
Sbjct: 430 ggcacctccccacccaaca 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no405_k02.g1 MSMg01no405_k02.g1 CHROMAT_FILE:
MSMg01no405_k02.g1 PHD_FILE: MSMg01no405_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:40 2005
(309 letters)
>mm_chr6_99251832_99252543
Length = 712
Score = 468 bits (242), Expect = e-136
Identities = 296/326 (90%), Gaps = 25/326 (7%)
Strand = Plus / Minus
Query: 1 cttctctttctccctctccctcctgtcctcgttgctctctttacccctctccatctctgt 60
|||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||
Sbjct: 604 cttctctttctccccctcccttctgtcctcgtcgctctctttacccctccccatctctgt 545
Query: 61 ------ctctttctccatctgcctctctgtctatgcggatggagcccttgagtttttcta 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cactacctctttctccatctgcctctctgtctatgcggatggagcccttgagtttttcta 485
Query: 115 aactcaagagaaacctaatcatgaggaaccttgccccgaacagttaaaagaaaca--ccc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 484 aactcaagagaaacctaatcatgaggaaccttgccccgaacagttaaaagaaacattccc 425
Query: 173 cccc--ccccactttg----aagcctgccctcctgtcactgcctttctgagaattagctg 226
|||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccccacccccac----ccccaagcctgccctcctgtcactgcctttctgagaattagctg 369
Query: 227 tgtgccagacaggactctttttat---tttgacatttattcacttggaacagacccgagg 283
|||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 368 tgtgccagacaggactct----aagaatttgacatttattcacttggaacagacccgagg 313
Query: 284 cttctaaaagtccactgttaagacga 309
||||||||||||||||||||||||||
Sbjct: 312 cttctaaaagtccactgttaagacga 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 712
Length adjustment: 9
Effective length of query: 300
Effective length of database: 703
Effective search space: 210900
Effective search space used: 210900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
