NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGAGATTGCTGCCACATTACAGTCTCCTAATTTATACT
ATGCTCACATGGCAGAAAGAGTGTATGGTATCACTATAGGCCTTTATAAA
AACATTGTAATCATTTTGTAGACTTCACTACATCAACTAACTATATATTA
ACCAACTTCAAAATACTTTCTTATAAAAAATAGTGTTTCACACATGTTGG
GGTATACATTAAGCCTATTGCAGTATGTCAGATCATTATTTGTCATAACA
ATGTTTTGCTATTGAATATACTTTAGAGTACTTGTTTTCCATATAAGGCT
TAATGGATACGGAATGTTAGTAAAAAAAAAAAAGTTTGTGATTGCTAATC
TAATCATGTACATACAGGCTTTTATCCAAGGATCATGCTCTCATGGTTCC
TGAGGGAAGCAACTATCCCAGTCAACATGTAATGTATTATGCATATGTAT
TCATCGCCCTAAACTGTATTCAACACAAAGAGGTGCACCGTGGTGTTTGA
GTACCTTCTAGAGTGGTTCATGCCAGTAGGCAAACGAGTTCCATTCTCTG
TGCTCCAAGATTGCATTGGAAGTCATCCAGGTTAACCTTACTCAGCTGGA
TCTGAAATCCCCTTGCGTGTCATCAGTGCATCCGGTGGTGACTCCCTTAC
GAGTGACCATGTGATTGACGCTTGACCATTTTGTACACTAGTACTGTTCT
AAAG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTCTGAATATCTATGCTC
CAAATGCAAGGGCAAAGACTATAGTGAAGCTCAAAGCACATATTGCACAT
CACACAATAATAGTGGGAGTCTTCAACACCCCACTCTCATCAAGGAACAG
ATCCTAGAAACAGACTAAACAAAGACACATGAAAACTAACAGAAGTTATG
AAACAAATGGATTTAACAGATATCTACAGAATATTTTATCATAAAAAAAA
GGATATACCTTCTTCTCAGCACCTCATGGCACCTTCTCCAAAATCAACCA
TATAATTGATCACAAAACAGTCCACAACAGATACAAAAAAATATTGAAAT
TATCCCATGCATCCTATCAGATCACCACAGACTAACGCTGACTTTCAATA
ACAACATAAATAATAGAAAGCCAACATTCACAAGGAAGCTGAAGAACACT
CTACTCAATGATACCTTGGTCAATGAAGAAAGTAAGAAAGGAATTAAAGA
CTTTTTTAGAGTTTAAAGAAAATGAAGCCACAATATACCCAAACTTATGG
GACACAATGAAAGCATTTCTAAGAGGGACACTCATAGATCTCAGTGCCTC
CAAAAAGAAAATTGTGAGAGCACACAGTATCAGTTTGACTGCACCTCTAT
AACCTCTTAGACATAAGGAAGGAAATTCCCTGAAAAGGAGTAAATTGCCC
GAAATTTTCN

Query= MSMg01no405_n02.b1 MSMg01no405_n02.b1 CHROMAT_FILE:
MSMg01no405_n02.b1 PHD_FILE: MSMg01no405_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:55 2005
         (518 letters)



>mm_chr6_19895100_19896019
          Length = 920

 Score =  955 bits (494), Expect = 0.0
 Identities = 510/516 (98%), Gaps = 2/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagagattgctgccacattacagtctcctaatttatactatgctcacatggcag 64
           ||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcaagagacagttgccacattacagtctcctaatttatactatgttcacatggcag 264

                                                                       
Query: 65  aaagagtgtatggtatcactataggcctttataaaaacattgtaatcattttgtagactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagagtgtatggtatcactataggcctttataaaaacattgtaatcattttgtagactt 324

                                                                       
Query: 125 cactacatcaactaactatatattaaccaacttcaaaatactttcttataaaaaatagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactacatcaactaactatatattaaccaacttcaaaatactttcttataaaaaatagtg 384

                                                                       
Query: 185 tttcacacatgttggggtatacattaagcctattgcagtatgtcagatcattatttgtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcacacatgttggggtatacattaagcctattgcagtatgtcagatcattatttgtca 444

                                                                       
Query: 245 taacaatgttttgctattgaatatactttagagtacttgttttccatataaggcttaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacaatgttttgctattgaatatactttagagtacttgttttccatataaggcttaatg 504

                                                                       
Query: 305 gatacggaatgttagtaaaaaaaaaaaa--gtttgtgattgctaatctaatcatgtacat 362
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 505 gatacggaatgttagtaaaaaaaaaaaaaagtttgtgattgctaatctaatcatgtacat 564

                                                                       
Query: 363 acaggcttttatccaaggatcatgctctcatggttcctgagggaagcaactatcccagtc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaggcttttatccaaggatcatgctctcatggttcctgagggaagcaactatcccagtc 624

                                                                       
Query: 423 aacatgtaatgtattatgcatatgtattcatcgccctaaactgtattcaacacaaagagg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacatgtaatgtattatgcatatgtattcatcgccctaaactgtattcaacacaaagagg 684

                                               
Query: 483 tgcaccgtggtgtttgagtaccttctagagtggttc 518
           ||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcaccgtggtgtttgagtaccttctagagtggttc 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 920
Length adjustment: 10
Effective length of query: 508
Effective length of database: 910
Effective search space:   462280
Effective search space used:   462280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)