BAC Information

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BAC

Clone NameMSMg01-405P19
Chromosome6 (Build37)
Map Location 135,460,409 - 135,460,780
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405P19.T7 (MSMg01no405_p19.b1)MSMg01-405P19.TJ (MSMg01no405_p19.g1)
ACCAG504288AG504289
length789777
length of high quality
(start - end)
392 (46 - 437)372 (76 - 447)
definitionCHROMAT_FILE: MSMg01no405_p19.b1 PHD_FILE: MSMg01no405_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:08 2005CHROMAT_FILE: MSMg01no405_p19.g1 PHD_FILE: MSMg01no405_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTTCTAGTTATCGGGTCACCCTCAGTCTACTAGCAGATTCTGCAG
AGCTTCTATGAGCTACAAAATGGCTCCATTGTGAAGAAAGTAGAACACAC
ACACACACACACACACACACACACACACACACACACACACACACAGAGAG
AGAGAGAGAGAGAGAGAGAGAAAACAGATAATGTATTTTTCCTACTAATT
TTGTAGCCTTGATAAACAGTTTTATCTCAATTTTACCTCCCCAACAATGC
TTAAAAAACAATAAAGAGGGGCTGGTTAGAGAGAGCAATGTGGGTTAGAG
AGCTTGCTGCCTGCATATATGGAGCTGCATTCAGATCAGCACGCAAGTAA
AAAGTTGGCTGTGTCTGGGCTCACCTGTAATGCCAGCACTGTGTGTGACA
GAGACAGGAATCCTGGGCCTTGCTGGCTGCCAGTGTAGTTTTGCGTCCAG
CGAGAGATCCTATCTCAAAGCAGTAAGGCAAATAATAATAGAGGAAACCT
GATGCCCCCCTCCGGTCTCCTTTGAGCACGCAATCCGGGCAAGCCATACA
CCTTCAGACCCATACCCCTATAACCTTGTGGGTCTAACTGTTTATTGGAT
CCCCCACTTCCCCTCAATTTCATAAATGATAACTCTCCTCAAACGTGTTG
ATTCGCGCTTGCGAATTCCACCCACTCAGACGTGGGTTAGATGATTATCA
ACACTTTTTCACCTCTTTTATATCTATTCTCTTCACCCT
NCCTATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATATGTCAGGACCACCATGTTACT
TGAACAAGATATGTAGAGAATGTTGGGGAATCTTTTAGAGCTGACCCAAT
GGCATCCTTTATAGTACATCAACCTTCTTTTGTGCTTTGTCACTTATAAC
TTCCCTGCTCAAGTATTAGCAAATCTCCTCACTTATGGCATCCTCCAAGG
CTGATTATCAGGATGCAGTGTGCCTGGTACCCTGAGCTTCTGTCCCTCAC
ACATCTCATTGTGATGCTTGATTTTCTGCCTATCTCACTAGACTGAGATG
TTCAAAGCACAGTAAGTAGACAATGGCTATGACTTTAAAAGTGCCTGTTG
AGTAAGTGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAC
ATGAAGACAGCTTCTGCTGTCTTTGCATACCATCTCATCATCTGGGCGAC
AGCAAGGCCTTTCAGTAAGACATGACAAAGTGGAGAGATGTACCACATGT
GTTTTCCGATGTCCCTACCTCCCCTGCTTATGCTTGCTATTGCGAATATT
TTTTGATCTAGTGTTATCTTTCTTGCGCCCTCTTATTTGTTCTCACCCCC
TCTTTGTTTTCATCTTCCCATATCACCTTTCAACCTCTCTTATATCCTAT
TGTTCCGCTTTCTTTTCCCCCCGCCTCCTTTTTCCCCGCCCCTACTTTTT
CTCTTTCCTCATTCTATACGTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_p19.g1 MSMg01no405_p19.g1 CHROMAT_FILE:
MSMg01no405_p19.g1 PHD_FILE: MSMg01no405_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:08 2005
         (372 letters)



>mm_chr6_135460258_135461029
          Length = 772

 Score =  712 bits (368), Expect = 0.0
 Identities = 371/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatgtcaggaccaccatgttacttgaacaagatatgtagagaatgttggggaatcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tatatgtcaggaccaccatgttacttgaacaagatatgtagagaatgttggggaatcttt 464

                                                                       
Query: 61  tagagctgacccaatggcatcctttatagtacatcaaccttcttttgtgctttgtcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tagagctgacccaatggcatcctttatagtacatcaaccttcttttgtgctttgtcactt 404

                                                                       
Query: 121 ataacttccctgctcaagtattagcaaatctcctcacttatggcatcctccaaggctgat 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ataacttccctgctcaagcattagcaaatctcctcacttatggcatcctccaaggctgat 344

                                                                       
Query: 181 tatcaggatgcagtgtgcctggtaccctgagcttctgtccctcacacatctcattgtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tatcaggatgcagtgtgcctggtaccctgagcttctgtccctcacacatctcattgtgat 284

                                                                       
Query: 241 gcttgattttctgcctatctcactagactgagatgttcaaagcacagtaagtagacaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gcttgattttctgcctatctcactagactgagatgttcaaagcacagtaagtagacaatg 224

                                                                       
Query: 301 gctatgactttaaaagtgcctgttgagtaagtgaatgaatgaatgaatgaatgaatgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gctatgactttaaaagtgcctgttgagtaagtgaatgaatgaatgaatgaatgaatgaat 164

                       
Query: 361 gaatgaatgaat 372
           ||||||||||||
Sbjct: 163 gaatgaatgaat 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)