Query= MSMg01no407_l03.b1 MSMg01no407_l03.b1 CHROMAT_FILE:
MSMg01no407_l03.b1 PHD_FILE: MSMg01no407_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:24 2005
(610 letters)
>mm_chr6_108261287_108262296
Length = 1010
Score = 1056 bits (546), Expect = 0.0
Identities = 594/613 (96%), Gaps = 7/613 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcttctgtcacctgcttcatgactctctgtagatgccatcacctcacagagac 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 199 ggaattttcttctgtcacctgcttcatgactctctgtagatgccatcacctcagagagac 258
Query: 64 cccctcccttcctgtcctgtcacctttaaccctttagctgtttcgtggtgtttttaagac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cccctcccttcctgtcctgtcacctttaaccctttagctgtttcgtggtgtttttaagac 318
Query: 124 cccactc-----ggagctctgcattttgtgttgcttcatttctagctttcctttcttctc 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccactccactcggagctctgcattttgtgttgcttcatttctagctttcctttcttctc 378
Query: 179 tatggaatttaagatgaatatgagagactatgcagagattgtgcccatcttggtcaccac 238
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatcgaatttaaggtggatatgagagactatgcagagattgtgcccatcttggtcaccac 438
Query: 239 tgtgtcttttgtacctagaactgtgtctgattcaaaggtgatacagaaattcatattgct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtgtcttttgtacctagaactgtgtctgattcaaaggtgatacagaaattcatattgct 498
Query: 299 aatggtgggaaagctcaatggtggagcgccttattgcatgcctgaggccctggttttcat 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 499 aatggtgggaaagctcaatggtggagcgccttcttgcatgcctgaggccctggctttcat 558
Query: 359 tcccagccctgaaaagtcaacagctggaagtagcttaaaagaccgtagaatgacttttct 418
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 559 tcccagccctgaaaagtcaacagctggaagtagcttaaaagactgtagaatggcttttct 618
Query: 419 ggctctgtgtgtcttctctggctggacaaggggcgacagatgctttgttcttagttgtca 478
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 ggctctgtgtgtcttccctggctggacaagggacgacagatgctttgttcttagttgtca 678
Query: 479 cactggttcatgtatttgattcaagatgacatttttctttcttctcctggggaagaatat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cactggttcatgtatttgattcaagatgacatttttctttcttctcctggggaagaatat 738
Query: 539 aaagaggagaatg-aanacnaaacaaaacagaacaaaaaacaataactaggcaatgtcaa 597
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaagaggagaatggaa-acaaaacaaaacagaacaaaaaacaataactaggcaatgtcaa 797
Query: 598 gcagcaagtctgc 610
|||||||||||||
Sbjct: 798 gcagcaagtctgc 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_l03.g1 MSMg01no407_l03.g1 CHROMAT_FILE:
MSMg01no407_l03.g1 PHD_FILE: MSMg01no407_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:24 2005
(565 letters)
>mm_chr6_108438806_108439767
Length = 962
Score = 1035 bits (535), Expect = 0.0
Identities = 557/565 (98%), Gaps = 3/565 (0%)
Strand = Plus / Minus
Query: 1 tggttttattgatgtacaccactggaaccagggctttttggatggtaggtgaacactgta 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 842 tggttttattgatgtacaccactgcaaccagggctttttggatggtaggtgagcactgta 783
Query: 61 tcagctgagctatacccagcttttcggagtttagaaaaaaaaattgcaaaatgaccagca 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 782 tcagctgagctatacccagcttttcggagtttag-aaaaaaaattgcaaaatgaccagca 724
Query: 121 gtaagccaaaggccaaggtacctaaagagaggcttgctccctctgtaaagctctgctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gtaagccaaaggccaaggtacctaaagagaggcttgctccctctgtaaagctctgctttg 664
Query: 181 cacagaggctattttgggagtctggcataaaagaatggacagtccatgcccatgcagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 --cagaggctattttgggagtctggcataaaagaatggacagtccatgcccatgcagaat 606
Query: 241 accccttttctctgatttcttaagctaggcaggagggacatgaagttttctgtgcacccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 accccttttctctgatttcttaagctaggcaggagggacatgaagttttctgtgcacccc 546
Query: 301 attaagcctccattctggggctattgagaaaccctttcggatgctagatgctgagtatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 attaagcctccattctggggctattgagaaaccctttcggatgctagatgctgagtatgg 486
Query: 361 aggcaatgtgggacaagggagtgtctgaaatcattcagtacacatgcagagacagagacc 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aggcaatgtgggacaggggagtgtctgaaatcattcagtacacatgcagagacagagacc 426
Query: 421 tagtaactccaggcctcttgccttctttgtattatgcccaggtcctgtacctaagtttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tagtaactccaggcctcttgccttctttgtattatgcccaggtcctgtacctaagtttaa 366
Query: 481 aagaggctaaggaaaggacaggtcaatctccactgggcttcagctttcccatccccaccc 540
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 365 aagaggctaaggaaaggagaggttaatctccactgggcttcagctttcccatccccaccc 306
Query: 541 aacacctgaagacactagtataccc 565
|||||||||||||||||||||||||
Sbjct: 305 aacacctgaagacactagtataccc 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 962
Length adjustment: 10
Effective length of query: 555
Effective length of database: 952
Effective search space: 528360
Effective search space used: 528360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
