Query= MSMg01no407_p04.b1 MSMg01no407_p04.b1 CHROMAT_FILE:
MSMg01no407_p04.b1 PHD_FILE: MSMg01no407_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:45 2005
(604 letters)
>mm_chr6_148213938_148214938
Length = 1001
Score = 1106 bits (572), Expect = 0.0
Identities = 593/600 (98%), Gaps = 3/600 (0%)
Strand = Plus / Minus
Query: 5 gaattctacgtttacatcagcaggcagcaggaagagacactgggcctggcttgagcatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gaattctacgtttacatcagcaggcagcaggaagagacactgggcctggcttgagcatct 915
Query: 65 gaaacctcaaagcttacccccaatgacatacttcctccaacaaggttacacctcctaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gaaacctcaaagcttacccccaatgacatacttcctccaacaaggttacacctcctaata 855
Query: 125 gtgccattccctggtgaccaagcattccaacctgtaagcctgtgagggccactacaaaga 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 854 gtgccattccctggtgaccaagcattccaacctgtaggcctgtgagggccactacaaaga 795
Query: 185 tccaaagtccactcacagtggaggctgacatttagtaaaggtcactctgagtgttaggat 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 794 tccaaagtccactcacagtggaggctgacatttaataaaggtcactctgagtgttaggat 735
Query: 245 cctagtgcttagtgtctcactaagcctcttgaggggaaaaagaaaaaaccttccaggatc 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cctagtgcttagtgtctcact-agcctcttgaggggaaaaagaaaaaaccttccaggatc 676
Query: 305 ccctctttttcagaattccctgggagaagctttgatggctctatttccactgtatcagat 364
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccctctttttcagaattccctgagagaagctttgatggctctatttccactgtatcagat 616
Query: 365 ggacattaatggaatcctcaagatatacattcacaggctgtgttaagtggtagttaatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggacattaatggaatcctcaagatatacattcacaggctgtgttaagtggtagttaatct 556
Query: 425 ctctacattcacttatgaaaggtctaagttttcattctaactgacatgagttattacaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctctacattcacttatgaaaggtctaagttttcattctaactgacatgagttattacaaa 496
Query: 485 taaaaggcaccactaacccattattatagaattattgtggtctcccccccctgccgattt 544
| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 495 tgaaaggcaccactaacccattattatagaattattgtggt-t-ccccccctgccgattt 438
Query: 545 tgaagaattttcagctaaataatgtcctatagagactaattttccaccttaattttgtaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaagaattttcagctaaataatgtcctatagagactaattttccaccttaattttgtaa 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1001
Length adjustment: 10
Effective length of query: 594
Effective length of database: 991
Effective search space: 588654
Effective search space used: 588654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_p04.g1 MSMg01no407_p04.g1 CHROMAT_FILE:
MSMg01no407_p04.g1 PHD_FILE: MSMg01no407_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:45 2005
(541 letters)
>mm_chr6_147999877_148000817
Length = 941
Score = 1019 bits (527), Expect = 0.0
Identities = 536/539 (99%)
Strand = Plus / Plus
Query: 1 caggtatggacctgggcagtgttcatcttcctgaccagtactaaataaagcttgctttaa 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 caggtatggacctgggcagtgttcattttcctgaccagtactaaataaagcttgctttaa 260
Query: 61 ttggataattgtggaagtgacccagcttatcccttaccaggctgtcctttgtaactcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggataattgtggaagtgacccagcttatcccttaccaggctgtcctttgtaactcttg 320
Query: 121 tgcctactaaggaggaacttaggaaccctctcccttctctctggtgtgagactttttccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctactaaggaggaacttaggaaccctctcccttctctctggtgtgagactttttccc 380
Query: 181 ttcttccacagagcttcctcaagcattgggtctgctttagtggagaccattgaagggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttccacagagcttcctcaagcattgggtctgctttagtggagaccattgaagggttt 440
Query: 241 tcagccagaagctctgctgatctatattttaagaaagaaaatctacacaaagccaataag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagccagaagctctgctgatctatattttaagaaagaaaatctacacaaagccaataag 500
Query: 301 gagaagggactggaggaatgagggattggaatcagagagaattcagggcagaatgctgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaagggactggaggaatgagggattggaatcagagagaattcagggcagaatgctgtc 560
Query: 361 aggaaaaggcagagatagcaaggactatctgagccttgaggaccatttgcaatctgattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaaaaggcagagatagcaaggactatctgagccttgaggaccatttgcaatctgattg 620
Query: 421 ggcccagggtgatggactcatagggagggagagagctggaagaagcttgagatcagtgct 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ggcccagggtgatggactcatagggagggagagagctggaagaagcttgtgatcagtgct 680
Query: 481 tctgcagatagtgctgagtttttaaagacttttacttgtgtgtttcatttttaattatg 539
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgcagatagtgctgagtgtttaaagacttttacttgtgtgtttcatttttaattatg 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
