BAC Information

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BAC

Clone NameMSMg01-408D17
Chromosome6 (Build37)
Map Location 104,286,300 - 104,286,783
singlet/doubletsinglet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408D17.T7 (MSMg01no408_d17.b1)MSMg01-408D17.TJ (MSMg01no408_d17.g1)
ACCAG505998AG505999
length790766
length of high quality
(start - end)		506 (40 - 545)504 (69 - 572)
definitionCHROMAT_FILE: MSMg01no408_d17.b1 PHD_FILE: MSMg01no408_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:09 2005CHROMAT_FILE: MSMg01no408_d17.g1 PHD_FILE: MSMg01no408_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCCTCCAAGCTTCATTGACCCCTGTATTTTTATCTTTATGAATGATTTAG
TAAGGTTCTCCCTACACAATGTACTTTTATCTTGTTTAACTCAACATGAG
CTTCATGTTCTGGACAATTCTAAAATAGGACATTGTTGAAAAATCAAAAT
ACTGAGAAACAAAACACATCAATAAACAGTGAATATAATTCTGCTGCACA
TCTGTCACAAGGAGCCAAAGAGTTCAAAGGCCTATTTACTTCTTCACTGA
CATCAGTACAGAAAATAACAATACTACAAGTATAGCATAGTGTCATTATG
AATCATTTGATGACTTTTTTCCTACCAGTCATTTTTGGTTCGATCCTAGG
TCTCTGGTCTACCCATCTCTGGTTCTTTGCCATCCAGTCAATGTTAGGCA
TGAGTTCCCTCTTATGGTGAGGGTTTCATATTGGAGCAGTCATTGATTTG
CCCCCTCCCACAAGTTCTTTGCCATCTTTATACCAGTACATCTAGAACAT
ATGACAGTTTTTAAAGTCAGGGTGTTTGTGACTGGGTTGGGGTGGATGGT
TCAATCCCTCCATTGGGAACCTGGCCTCGTTAAACAAAAAGGCCTGTTTC
AGGTTCATAATCCCCCCTAATAAAGGGACTTTTCTAGGGGCACCCTTTGA
GAATTCTGGAAACTTTTCCCCCCCCCAAGTTTTTTGTCCTGCGTATATTA
TCCCCCAAAGAATTTTTTATTCCACTGTTAATATACAAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTACCTAAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATTCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTGGACATATTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATACCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCTAAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCCCNAAGGAACTCACACAATATGTACTCACTGATAAGTGGAATT
ATCCCCAACCTAAGATACCCCCGAAATAAAAACAATTTTCTTAAACCCTG
AAATTCTGAAAAATGAAAACTGAAGGGGGGACCTATGGCCCCCCTCTAAA
AGGGAATAAAACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_d17.b1 MSMg01no408_d17.b1 CHROMAT_FILE:
MSMg01no408_d17.b1 PHD_FILE: MSMg01no408_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:09 2005
         (506 letters)



>mm_chr6_104286300_104287205
          Length = 906

 Score =  928 bits (480), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctccaagcttcattgacccctgtatttttatctttatgaatgatttagtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaattcttcctccaagcttcattgacccctgtatttttatctttatgaatgatttagtaa 425

                                                                       
Query: 65  ggttctccctacacaatgtacttttatcttgtttaactcaacatgagcttcatgttctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggttctccctacacaatgtacttttatcttgtttaactcaacatgagcttcatgttctgg 365

                                                                       
Query: 125 acaattctaaaataggacattgttgaaaaatcaaaatactgagaaacaaaacacatcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acaattctaaaataggacattgttgaaaaatcaaaatactgagaaacaaaacacatcaat 305

                                                                       
Query: 185 aaacagtgaatataattctgctgcacatctgtcacaaggagccaaagagttcaaaggcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaacagtgaatataattctgctgcacatctgtcacaaggagccaaagagttcaaaggcct 245

                                                                       
Query: 245 atttacttcttcactgacatcagtacagaaaataacaatactacaagtatagcatagtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atttacttcttcactgacatcagtacagaaaataacaatactacaagtatagcatagtgt 185

                                                                       
Query: 305 cattatgaatcatttgatgacttttttcctaccagtcatttttggttcgatcctaggtct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cattatgaatcatttgatgacttttttcctaccagtcatttttggttcgatcctaggtct 125

                                                                       
Query: 365 ctggtctacccatctctggttctttgccatccagtcaatgttaggcatgagttccctctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 124 ctggtctacccatctctggttctttgccatccagtcaatgttaggcatgagttccctttt 65

                                                                       
Query: 425 atggtgagggtttcatattggagcagtcattgatttgccccctcccacaagttctttgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  atggtgagggtttcatattggagcagtcattgatttgccccctcccacaagttctttgcc 5

               
Query: 485 atct 488
           ||||
Sbjct: 4   atct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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