Query= MSMg01no409_a22.b1 MSMg01no409_a22.b1 CHROMAT_FILE:
MSMg01no409_a22.b1 PHD_FILE: MSMg01no409_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:16 2005
(578 letters)
>mm_chr6_138557109_138558084
Length = 976
Score = 818 bits (423), Expect = 0.0
Identities = 531/575 (92%), Gaps = 27/575 (4%)
Strand = Plus / Plus
Query: 8 ttccaggagcttgagggaatgcctac--tgtatcatataggtgaattatgaccatcaggg 65
|||||||||||||||| ||||||||| ||| | |||||||||||||||||| ||| |||
Sbjct: 225 ttccaggagcttgaggaaatgcctactatgt-t-atataggtgaattatgactatcgggg 282
Query: 66 ttcagacctcaggtcaactggataccagcctgcaattccccacaaaagaaaaaaaaaaga 125
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 283 ttcagacctcaggtcaactggataccagcctgcaattccccacaaa--aaaaaaaaaa-a 339
Query: 126 aagaaagaaagaaag--aaagaaagaaagaaagaaagaaagaaagaaagaaagcaaaaaa 183
|| ||| ||| |||| ||||| ||||| |||||| ||||| ||| ||||||
Sbjct: 340 aa-aaa-aaa-aaaggaaaaga---aaaga---aaagaa--aaaga---aaa--aaaaaa 383
Query: 184 ccagaaaaaaaaaaaccaacaataacaactgacacacaattccatatgctgtttatcaat 243
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 ccagaaaaaaaaaa--caacaataacaattgacacacaattccatatgctgtttatcaat 441
Query: 244 gtgtaacatccattacctgctcaatattatttctgctggcaacttggtagctccctatgt 303
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 442 gtgtaatatccattacctgctcaatattatttctgctggcaacttggtagttccctatgt 501
Query: 304 tgagagagcactaagatacttgacagtgatttctctgatacaaaatggtgtcgttctact 363
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 502 tgagagagcactaagatacttgacagtgattgctctgatacaaaatggtgttgttctact 561
Query: 364 tttttcatgtttgtaggatgagttggtgttgaatcacagatgatttgcacgtactgaagg 423
|||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 562 tttttcatgtttgtagaatgagttggtgttgaatcatagatgatttgcatgtactgaagg 621
Query: 424 tattatcatgctattctgcagttgtggaggatgggtgatattgaacctatcaggaacaga 483
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |
Sbjct: 622 tattatcatgctattctgcagttgtggagggtgggtgttattgaacctatcaggaatata 681
Query: 484 gctgagcatactctgtctgctattcactaccgcatttcggtaaaaatagctaatctctct 543
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 682 gctgagcatactctgtctgctattcactaccccatttcggtaaaaatagctaatctctgt 741
Query: 544 ccactgtaatcgactatcattgggggaagaaataa 578
|||||||||||||||||||||||||||||||||||
Sbjct: 742 ccactgtaatcgactatcattgggggaagaaataa 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 976
Length adjustment: 10
Effective length of query: 568
Effective length of database: 966
Effective search space: 548688
Effective search space used: 548688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_a22.g1 MSMg01no409_a22.g1 CHROMAT_FILE:
MSMg01no409_a22.g1 PHD_FILE: MSMg01no409_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:16 2005
(508 letters)
>mm_chr6_138749971_138750878
Length = 908
Score = 967 bits (500), Expect = 0.0
Identities = 506/508 (99%)
Strand = Plus / Minus
Query: 1 cctttaacgtttccagatttcactctctgcatctaaagtggtaatattggtgccagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cctttaacgtttccagatttcactctctgcatctaaagtggtaatattggtgccagccat 649
Query: 61 ataagaatttataaagataatgctcacagaatcgtgtggagcatattcctcttggtgaat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ataagaatttgtaaagataatgctcacagaatcgtgtggagcatattcctcttggtgaat 589
Query: 121 gtatatacaccatgcatatacatgttataattaaaataaactgtctgtgtgtaaatatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtatatacaccatgcatatacatgttataattaaaataaactgtctgtgtgtaaatatag 529
Query: 181 atacagactgcacacccctaaaatggagataggatctcacagtcacaactaaaagtgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atacagactgcacacccctaaaatggagataggatctcacagtcacaactaaaagtgcat 469
Query: 241 tttggaaatcacactttttcgaaggagaatttgatttgctcaggagtaagaagtgtaagt 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttggaaatcacactttttcgagggagaatttgatttgctcaggagtaagaagtgtaagt 409
Query: 301 ccagggatattttctattttacacagataattttaagagtaagcattcacaaattttaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ccagggatattttctattttacacagataattttaagagtaagcattcacaaattttaat 349
Query: 361 ttattaataacatgcattttatttattttttgttccaaactaggtttattcttttaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttattaataacatgcattttatttattttttgttccaaactaggtttattcttttaagat 289
Query: 421 aggcaagaaagacagaaagaatgccaagttttaaggaaagacactgcaataaaatatgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aggcaagaaagacagaaagaatgccaagttttaaggaaagacactgcaataaaatatgca 229
Query: 481 cacacagacttgaaacaatctggtcata 508
||||||||||||||||||||||||||||
Sbjct: 228 cacacagacttgaaacaatctggtcata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
