BAC Information

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BAC

Clone NameMSMg01-409E24
Chromosome6 (Build37)
Map Location 89,565,133 - 89,565,582
singlet/doubletsinglet
Overlap genenone
Upstream gene4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6
Downstream geneTxnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409E24.T7 (MSMg01no409_e24.b1)MSMg01-409E24.TJ (MSMg01no409_e24.g1)
ACCAG506827AG506828
length781740
length of high quality
(start - end)		454 (52 - 505)461 (58 - 518)
definitionCHROMAT_FILE: MSMg01no409_e24.b1 PHD_FILE: MSMg01no409_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:37 2005CHROMAT_FILE: MSMg01no409_e24.g1 PHD_FILE: MSMg01no409_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTAAATGTTCTTGCAAACTTCTAAGGAAACAGCGCTAC
CCGGCAAGGAGAGCTACAAATTGGCACAGTCCCTGTGAGAGCTCGGTGGT
AACTCCACTTGCCTCCCAGGCCAAATGGTTTTCCTGCTTTTCTTGCAGTT
CCTCAGCCTGAAAAGGGAGGGTAGGACCTCTGGGTACCCTATGTGTTCTG
AAGAGCTGCATAGTGTCTTCCTCAGAGACCTGGGGTGACCAGAGAGAGAG
GAAGGGAGAGTAGGTTCCCTTCTCTGCATTCAAGACCACTATTGGAATCA
CACATCCAAAAGGGCTGTCCCAGGGGCATTTGGAGGCCTTCCATACTCCC
CATCTCTCACCCCTGCTAAGCAAACCTAAGCACAAACCCTGTATTTCCAA
TGCAAATGAGAAGACTGGCCTTCTGTGTCCCCAAGCCCTCGACAGGCCAC
CGTGGAATTGGCATAATTGCGCTCATTTGCATCTGTCTGCCTGCCCTCGA
AAGTTCATGATGGACTCCCGAAGTTAAAAGTCACATGTGTGCAGGGTCAG
GAGCCCAGAGAAGTTCTGTACGCCTGCACGAAAAGCTGGAAGTTGGGTGT
CTCCTGGATGGATTTGACACCAGGGGGAATTGGTCCTTGGGCTCCGTCCG
CCCCCAGGCCTCCCCGGAGAATCTCCCCCCCCCAAGGTTTCTTGTCCATG
TTGTGTAAAAAAGGGTAAAAAAAAAAAAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCACTCTTTGCACATATGATTCTTTTTCTCAGACTCTTCTAGGA
AAGCAGACTTCTTGCTGGAGATCATGTCAGCACCATGGTCACTTCTGGCA
CTGAGCTGCAAAGGCAGCTCCAGTGTTGTGTCTCCTGGAGAGAGTTTCCT
GTGACTGCAAATGTATGAATGTACATAACAGATCAGACATATGAATATTT
AGTATTAGCTGATACCATAAAGAGATGAGCTTGAAATATGCTTTTACATT
AAAAGCGAATTATCAAATTAAGTCATGTTTTTTCATATAAATGAAAGAAT
GTGTGTCACTCAATGTTTTAAGAGACCGATTCACAGAAATTTGTGAATGG
TAAACACATATTCCAGACCTGGAAAAGTCATTGTTTATACGTGAATAGCG
CAGACTTTTAGAGTTTTTAACACAAGGAAATAAATCAAATCTTGGGAATG
GGAAGAGACAAGTTGGCAAAAGAATAAATTACATGTACTGTCTTCATTTT
TAATAAGGCACACTGCCTGAAAAAAGGGTCACAAGTCAACAAAATGGGAA
TGGGATTCAACCACTACAAATAAAAAAATGTCAAGAGTGAATGGCCAAGT
TTTGTTCTTAAAGTTCAACATAGACTTGATATTTCATAACTGGGAATCTT
GTCCTTTACTGAAACACCCCCGTGGGATATACAAAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_e24.b1 MSMg01no409_e24.b1 CHROMAT_FILE:
MSMg01no409_e24.b1 PHD_FILE: MSMg01no409_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:37 2005
         (454 letters)



>mm_chr6_89564929_89565782
          Length = 854

 Score =  839 bits (434), Expect = 0.0
 Identities = 446/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaaatgttcttgcaaacttctaaggaaacagcgctacccggcaaggagagct 64
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaatgtgcttgcaaacttgtaaggaaacagcgctacccggcaaggagagct 264

                                                                       
Query: 65  acaaattggcacagtccctgtgagagctcggtggtaactccacttgcctcccaggccaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaattggcacagtccctgtgagagctcggtggtaactccacttgcctcccaggccaaa 324

                                                                       
Query: 125 tggttttcctgcttttcttgcagttcctcagcctgaaaagggagggtaggacctctgggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggttttcctgcttttcttgcagttcctcagcctgaaaagggagggtaggacctctgggt 384

                                                                       
Query: 185 accctatgtgttctgaagagctgcatagtgtcttcctcagagacctggggtgaccagaga 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 accctatgtgttctgaagagctgcatggtgtcttcctcagagacctggggtgaccagaga 444

                                                                       
Query: 245 gagaggaagggagagtaggttcccttctctgcattcaagaccactattggaatcacacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaggaagggagagtaggttcccttctctgcattcaagaccactattggaatcacacat 504

                                                                       
Query: 305 ccaaaagggctgtcccaggggcatttggaggccttccatactccccatctctcacccctg 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 ccaaaagggctgtcccaggggcatttggaggccttccatactccccgtctctcacccctg 564

                                                                       
Query: 365 ctaagcaaacctaagcacaaaccctgtatttccaatgcaaatgagaagactggccttctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaagcaaacctaagcacaaaccctgtatttccaatgcaaatgagaagactggccttctg 624

                                         
Query: 425 tgtccccaagccctcgacaggccaccgtgg 454
           ||||||||||||||||||||||||||||||
Sbjct: 625 tgtccccaagccctcgacaggccaccgtgg 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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