Query= MSMg01no411_b23.b1 MSMg01no411_b23.b1 CHROMAT_FILE:
MSMg01no411_b23.b1 PHD_FILE: MSMg01no411_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:04 2005
(497 letters)
>mm_chr6_6225927_6226826
Length = 900
Score = 868 bits (449), Expect = 0.0
Identities = 486/501 (97%), Gaps = 13/501 (2%)
Strand = Plus / Plus
Query: 5 gaattccttaactttaaaaaa-----aaaaaaccagcatgggagttatgccaagacatgc 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaactttaaaaaaaaaacaaaaaaccagcatgggagttatgccaagacatgc 264
Query: 60 agcttggtctacaggctgcaattaagggtaaactttaaagaggaaaatgaaatagaagag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcttggtctacaggctgcaattaagggtaaactttaaagaggaaaatgaaatagaagag 324
Query: 120 agtttgacccccttttgaagctgtaatgacataatttgcatgttcagctcctaagcttcc 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtttgacccccctttgaagctgtaatgacataatttgcatgttcagctcctaagcttcc 384
Query: 180 accatgcctcagtaaaattatgtcctttccaacatggagggaacagacgggtcactacaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accatgcctcagtaaaattatgtcctttccaacatggagggaacagacgggtcactacaa 444
Query: 240 gagaaaaggggaggacaggatcacagggccacagcatagacagggatacaaagaggacct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaaaaggggaggacaggatcacagggccacagcatagacagggatacaaagaggacct 504
Query: 300 caaagtttgaatctttcattgaaggagctttgcttactcatttgctctctcttctccaac 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 caaagtttgaatctttcattgaaggagctttgcttactcatttgctctctcttctcca-c 563
Query: 360 cccccaccccacccca-tgctgggaacgggacatgtcaacacctttgaaaactctgtgat 418
||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccccc-cccc-ccccaatgctgggaacgggacatgtcaacacctttgaaaactctgtgat 621
Query: 419 ttgcttccccgactctc-aaaa-gactacgctggggccggagcgatgacttagtggttcg 476
|||||||||| | |||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 622 ttgcttcccc-a-tctctaaaacgactacgatggggccggagcgatgacttagtggttcg 679
Query: 477 gggtccttattgtttttggag 497
|||||||||||||||||||||
Sbjct: 680 gggtccttattgtttttggag 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 900
Length adjustment: 10
Effective length of query: 487
Effective length of database: 890
Effective search space: 433430
Effective search space used: 433430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_b23.g1 MSMg01no411_b23.g1 CHROMAT_FILE:
MSMg01no411_b23.g1 PHD_FILE: MSMg01no411_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:04 2005
(517 letters)
>mm_chr6_6255410_6256326
Length = 917
Score = 963 bits (498), Expect = 0.0
Identities = 513/520 (98%), Gaps = 6/520 (1%)
Strand = Plus / Minus
Query: 1 ttttgaaatacaagcaacctcatgacatccaggcagcagtttctcacccatggcgttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttttgaaatacaagcaacctcatgacatccaggcagcagtttctcacccatggcgttccc 514
Query: 61 tcctctgggtttcaatgacagcggggaccagctgcctccaaggatttttttcttaagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcctctgggtttcaatgacagcggggaccagctgcctccaaggatttttttcttaagggt 454
Query: 121 ccttgtggctccaacaacagaatccatgaaagcaccaaaggaggttcatttaagggtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccttgtggctccaacaacagaatccatgaaagcaccaaaggaggttcatttaagggtggg 394
Query: 181 agacctttgaaaatcagctcacccttgggcttctggcaggccattttgtgtgaaagggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agacctttgaaaatcagctcacccttgggcttctggcaggccattttgtgtgaaagggtt 334
Query: 241 ggttatatattggtctccactgaattgcagaaataggcaacatg---agattgcaaagac 297
|||||||||||||||||||||||||||||||||| || ||| | |||||||||||||
Sbjct: 333 ggttatatattggtctccactgaattgcagaaat-gg--acaaggtaagattgcaaagac 277
Query: 298 cagttggacagaatgcctgcgggcctgcttcctacagcaggcagctggacgtctcagaat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cagttggacagaatgcctgcgggcctgcttcctacagcaggcagctggacgtctcagaat 217
Query: 358 atggctaaaagaatgctggacggatggatagatgaacggatggatggtcaggcagacaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atggctaaaagaatgctggacggatggatagatgaacggatggatggtcaggcagacaga 157
Query: 418 cagacagacggatgggtggatggatgaataaacaaatgaatgttaaagaaacaccacact 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cagacagacggatgggtggatggatgaataaacaaatgaatgttaaagaaacaccacact 97
Query: 478 ggtggctattgctccaggggcttgtattaaaccatgtgac 517
||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ggtggctattgctccaggggcttgtattaaaccatgtgac 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
