BAC Information

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BAC

Clone NameMSMg01-411C07
Chromosome6 (Build37)
Map Location 114,965,430 - 115,165,215
singlet/doubletdoublet
Overlap gene1500001M20Rik, LOC100043420, Syn2
Upstream geneAtp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4
Downstream geneTimp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411C07.T7 (MSMg01no411_c07.b1)MSMg01-411C07.TJ (MSMg01no411_c07.g1)
ACCAG508225AG508226
length738783
length of high quality
(start - end)
246 (78 - 323)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no411_c07.b1 PHD_FILE: MSMg01no411_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:05 2005CHROMAT_FILE: MSMg01no411_c07.g1 PHD_FILE: MSMg01no411_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,164,970 - 115,165,215)(114,965,430 - 114,965,673)
sequence
NNGGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCXXXXXXXXX
XXXXXXXXXTCAAAGGTACAATAATTTCCTATTAAGATCATGAGCCAATA
TATAGACATGTTTCTTATATAAACATAAATGAGAGTACTATTTTTCTAGC
AATCATTTTATTAAAGGTCTCAGTTTTTTCAGATGCCCACTTTCCAAGCC
TCCTGTCTTGTGACAACTCACGTCACCATCTTCTGTGTCTTGTACAAGTA
TTAAAATCTAAACCCCGAGGTTCCTAAGACAGAATATCCTCTTCTAATCT
GACTATTCAGTCTGTCTTCATTTTCTGCTTCTGGATATGCTCTCACTTTC
TTGCAAGCTCATTTGTGAATTTCAAAGAACATTATTTTTCATTTAGAGTT
GTTAGAATTCAATGGTGTAGGATTTTCAAGTTACTGAGCTTAAACGACCA
CCAGCAATAAAAAATTTCTGAACTGAAGATAAGAAGCTTAATTCAAAAAG
CATTTATTGGTTGGTCACTTACTGTGATGATAAAATTTTATGCATCTATT
TGTCTAGGCTATGGTTCTCAATTACATTGTTAAACATTTTAACAACATCT
TCACTCTAGATATTGCTGCGAAGGTATTTTGCAGATGTGATTAGTATTTA
CAATCATCTGACCGTACATACAGGAGTTATCTACGAATGTGGATGAGAAT
CACCTATATACCTGAAGGTACTAATGATATATAACCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTCACCCTTGGCTACATAGGG
ACCCGAAGAACAGCCTGGGCTGCCACTGACTGTCTAAAACAATAAAAGCA
AGAAGAAAATGTGGCACAGATATTCAACAGAATCTTATAGGAAAATGAAC
CCATGGTGACTGCAGGAAAGTGGCCTCGAGGCAACCTTACTGTAACGAGA
GGCTGTGAGGGAAGTGTACAGGGCTGGGCGATGGAACACACGTGATAAGA
AGCAAGCGGTGACTGAGTGACTTTTTTACAAAAGGCAAGTGGTCAGAGCG
GGGCAGGGCACTCAGGGTGTTGCGTGAACGGTAACGAATTATAATGACCC
ATGCGTATGAAAATGCCAGTGAAGCTCGTTACTCTTAGTATAAACATCAT
TACAGTCAACAAAGACATAGTTTCCGTCGCTGGCCTCTGGAGCTTGGTCT
GTAATTCCACGCTTCCTGTATCACTCATTCCTAATACTGCCACGTTCTTG
GCTTCCCCTGTTTCTGTACTCATTTCTCTCCCCTTTCCGGCTCTTTTCTC
CCTCTCTCTGCCCTTCTTTCCAATTCTTATCCCCACTTTTCCCTTTACCT
TTATCTTTCCCGCTTCCTCTTTATTTCCTTCACTTTTTCCCTTCTTTTTT
TTACTCCCTCACTTCCCGCAAAACGTCCTATATCTCTCCTTACCTCCCTT
TTCTTCCTCTCCTCTCTGTCCACCCACATTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_c07.b1 MSMg01no411_c07.b1 CHROMAT_FILE:
MSMg01no411_c07.b1 PHD_FILE: MSMg01no411_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:05 2005
         (246 letters)



>mm_chr6_115164770_115165415
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctattaagatcatgagccaatatatagacatgtttcttatataaacataaatgagagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cctattaagatcatgagccaatatatagacatgtttcttatataaacataaatgagagta 387

                                                                       
Query: 61  ctatttttctagcaatcattttattaaaggtctcagttttttcagatgcccactttccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctatttttctagcaatcattttattaaaggtctcagttttttcagatgcccactttccaa 327

                                                                       
Query: 121 gcctcctgtcttgtgacaactcacgtcaccatcttctgtgtcttgtacaagtattaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 326 gcctcctgtcttgtgacaactcacgtcaccatcttctgtgtcttgtacaagtattaaaag 267

                                                                       
Query: 181 ctaaaccccgaggttcctaagacagaatatcctcttctaatctgactattcagtctgtct 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctaagccccgaggttcctaagacagaatatcctcttctaatctgactattcagtctgtct 207

                 
Query: 241 tcattt 246
           ||||||
Sbjct: 206 tcattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no411_c07.g1 MSMg01no411_c07.g1 CHROMAT_FILE:
MSMg01no411_c07.g1 PHD_FILE: MSMg01no411_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:05 2005
         (244 letters)



>mm_chr6_114965230_114965873
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtcacccttggctacatagggacccgaagaacagcctgggctgccactgactgtcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtcacccttggctacatagggacccgaagaacagcctgggctgccactgactgtcta 260

                                                                       
Query: 61  aaacaataaaagcaagaagaaaatgtggcacagatattcaacagaatcttataggaaaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aaacaataaaagcaagaagaaaatgtggcacagatattcaacagaatcttatagaaaaat 320

                                                                       
Query: 121 gaacccatggtgactgcaggaaagtggcctcgaggcaaccttactgtaacgagaggctgt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 321 gaacccatggtgactgcaggaaagtggccgcgaggcaaccttactgtaatgagaggctgt 380

                                                                       
Query: 181 gagggaagtgtacagggctgggcgatggaacacacgtgataagaagcaagcggtgactga 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggaagtggacagggctgggcgatggaacacacgtgataagaagcaagcggtgactga 440

               
Query: 241 gtga 244
           ||||
Sbjct: 441 gtga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)