BAC Information

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BAC

Clone NameMSMg01-411C17
Chromosome6 (Build37)
Map Location 106,416,516 - 106,569,710
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411C17.T7 (MSMg01no411_c17.b1)MSMg01-411C17.TJ (MSMg01no411_c17.g1)
ACCAG508245AG508246
length774768
length of high quality
(start - end)
272 (43 - 314)247 (54 - 300)
definitionCHROMAT_FILE: MSMg01no411_c17.b1 PHD_FILE: MSMg01no411_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:07 2005CHROMAT_FILE: MSMg01no411_c17.g1 PHD_FILE: MSMg01no411_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,416,516 - 106,416,781)(106,569,464 - 106,569,710)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAGAGGATCCGCGGA
ATTCTAGCATTTCCTTTAAATCCTGAACCAGCATGCTGGCAGCCAATACC
AATTAGGTGGGGCTTTGTAGGCAACTCCAAATCTTTCTGCAATCCCAGCC
CCTTAATGATTTCTCACCCGGGCTTGGTATTTTATTGTTTACAAATTGTT
TTCACATGTATGGTCCCATTAGACCATCAAGCTTATGAAGTGAGGGGTTG
TTATCTCTTTCTCACATGTGAGAAAATTGAAAATTGTGGCTTAGAGAGAT
GAAGTGATCTGAAGAATATTGTTTAGTCCAGTGGAATATGTCTCCTCCTG
AGCTGTCTTGCCCCATTCAGCAAGAAATGTGCAGCTGACAAACGTCCATT
ATAATAGGTTCCAGTTCTGATAGTAAGCAGGAAGGCAAGAAGGAAGGGAG
GGCAGAAAAGAGAGCTGATGAGGAAGCACAGCACACCCCACTCTCTCTTT
TCCTATATCTTTTCTTACCTCTTTACCCTTTTTTTTTTTTTCCCCTCCTC
TTCCCCTTCTTCTTTCATTTTTTTTACCTCCTTCCTTACCCCCTACCTCC
TTCCTCTTTCCTTTCTCATTCATCTCTTATCCTTCCCTCCCCCCTCTCAC
CCTCTTCCTTTCTTTTATTCTTACTTTTCCTTTCATCTCCTTTCTACCCT
CCTTTTTCTTTCTCTCATTTATCTCTTCCCTTTATCCCACCCCTTTTTAT
TCTTTATTATTACACTTCCCCTTN
CCTGGCGGCCGCCTGTTTCACAAATTGAGGNGAACTATAGAAGTTTCAAC
AAAATTCTATGCTATAAATATTAGCTAGTGCCTTTTTCCTTTGCCCCGTG
AAACAGAGTAAACCTGCAGGCAGATGCCTATGCTACTGGCTCAGAGAATT
AATAAACCAAAGTAGTTGAAGTCCAGATAAATACAGATCTACTTCTAACT
AATGTTCTCTGACTCCCAACTCTCCATCTTTATAGATAAGTACACTCATG
ATAAAAAGGACTTTCAAGATGGCAGCAAACTGTCAACTTCCAATGACCCT
GTTTATATAATTAGGTGAACTTTTTTAGCTTCATGCTTAAGTTATAATTG
AGGTAAATATTCTTTCTGAATATTTTAACTTGCCTTGGGCTGTCTTACTT
CAGAGAGGAATCTACAAATAGGTCAGTAAAAAAGAATATGAACCAATTCA
TCAGAATGCATTGAGTATCAGCAGGAAAAAAAAATGGTCTCCTATTTTAC
CAGTACAACCAGGGAGAGCTTGTTTCATATTTCTGGCCTTAAGTCTTTCC
ATTTGTGGTGACCTTCCATAAGCCCCCCCTTTGACTGTTATTTTTATTAC
TCCTCGCGTCCTCCGATTACCCTTCGCCACTTGACATTCCCTTATTATCG
ACTTGTGCCATGACTTGGATCGCTGATTACCACTTCTATACGAACACGTT
CAATTTAAGTAACTTCATCCCTTTACACAATCCCCCGTGGCCCTTTTCAT
TCTTTGGCTCCTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_c17.b1 MSMg01no411_c17.b1 CHROMAT_FILE:
MSMg01no411_c17.b1 PHD_FILE: MSMg01no411_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:07 2005
         (272 letters)



>mm_chr6_106416310_106416981
          Length = 672

 Score =  491 bits (254), Expect = e-143
 Identities = 263/266 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctagcatttcctttaaatcctgaaccagcatgctggcagccaataccaattaggt 66
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctagcacatcctttaaatcctgaaccagcatgctggcagccaataccaattaggt 266

                                                                       
Query: 67  ggggctttgtaggcaactccaaatctttctgcaatcccagccccttaatgatttctcacc 126
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 267 ggggctttgtaggcaactccaaatctttctgcaatccctgccccttaatgatttctcacc 326

                                                                       
Query: 127 cgggcttggtattttattgtttacaaattgttttcacatgtatggtcccattagaccatc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgggcttggtattttattgtttacaaattgttttcacatgtatggtcccattagaccatc 386

                                                                       
Query: 187 aagcttatgaagtgaggggttgttatctctttctcacatgtgagaaaattgaaaattgtg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagcttatgaagtgaggggttgttatctctttctcacatgtgagaaaattgaaaattgtg 446

                                     
Query: 247 gcttagagagatgaagtgatctgaag 272
           ||||||||||||||||||||||||||
Sbjct: 447 gcttagagagatgaagtgatctgaag 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no411_c17.g1 MSMg01no411_c17.g1 CHROMAT_FILE:
MSMg01no411_c17.g1 PHD_FILE: MSMg01no411_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:07 2005
         (247 letters)



>mm_chr6_106569264_106569910
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctatgctataaatattagctagtgcctttttcctttgccccgtgaaacagagtaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attctatgctataaatattagctagtgcctttttcctttgccccgtgaaacagagtaaac 388

                                                                       
Query: 61  ctgcaggcagatgcctatgctactggctcagagaattaataaaccaaagtagttgaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgcaggcagatgcctatgctactggctcagagaattaataaaccaaagtagttgaagtc 328

                                                                       
Query: 121 cagataaatacagatctacttctaactaatgttctctgactcccaactctccatctttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagataaatacagatctacttctaactaatgttctctgactcccaactctccatctttat 268

                                                                       
Query: 181 agataagtacactcatgataaaaaggactttcaagatggcagcaaactgtcaacttccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agataagtacactcatgataaaaaggactttcaagatggcagcaaactgtcaacttccaa 208

                  
Query: 241 tgaccct 247
           |||||||
Sbjct: 207 tgaccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)