BAC Information

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BAC

Clone NameMSMg01-411G18
Chromosome6 (Build37)
Map Location 30,441,412 - 30,441,872
singlet/doubletsinglet
Overlap gene2700094F01Rik
Upstream geneCrim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik
Downstream gene1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411G18.T7 (MSMg01no411_g18.b1)MSMg01-411G18.TJ (MSMg01no411_g18.g1)
ACCAG508436AG508437
length745779
length of high quality
(start - end)		460 (68 - 527)424 (77 - 500)
definitionCHROMAT_FILE: MSMg01no411_g18.b1 PHD_FILE: MSMg01no411_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:27 2005CHROMAT_FILE: MSMg01no411_g18.g1 PHD_FILE: MSMg01no411_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATCACACAACACTAGATGAGCTCAGGAACTCAGGGGT
AGAGCATGTGCCTAGTTTGCCTGTTCAGTGCCCCCACCTCAAAAAACAAA
ACAAAAAAAACCCACAGCCTTCACATCAGAGTTCTCTCCAGGACCTCCCC
TACTTGTCATTCCCAGGCTGCTTTCGGTCTGTTTGATTGCAAGCAAGTCC
TACATGTTGCTGAGAGTCAGAGCCGGGCAGTTTGTGAAGCTCCTTCATTA
AAGCTCCATTGTGGGATGGTCTTTCAGTTGTTGAGTTAGTTCATCTGTAA
TGTTTTCTTAACGTATTTGTAAAACATAGCTTTCTACAATGTTAACTAAC
CATGCTATTAGCACATACTGACCACAGTCAGCTACCACACCTCACATTTG
TTGTTTTAAATGCCTTACCATCTCAGGAAATACATAATCCTGTTTTAAAT
ATTGTTTGTTTGAATCAGGATTCAAATACCGCCATGTATTATGATAAATT
AATGTTTCCTTTAAGTTACAGTTTCCTTGATCATCCCTCCTTTTCTTCCT
GCCTTCCTTTCTTTTAACTCTCCTTTTCTAAAACCCCGAAAAGTCTTCCC
AATAAAATCTTCCTTACGGAAACTTCCCGGTTTCTCTTTTGTTTGTATCC
CTTTGTCACCCTTGTTCCCCCTCATTATAATTTCAATTCTTTCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGAGATCCACCTGTCTCTGCCT
CCCAAGTGCTGGGATTTAAAGATGTGGCCACCACCACCCAGCTCTAATCA
TTACATTTTTATGTATTTGTTTTGTGTGTAAAGGGTATATGAGTGCCACA
GCACACATGTGGAGATCAGAGGACAGCTTGTAGGAGTTAGTTCTCTCCTT
CTACTAAGTGGGTCCTAGGGATAGAACTCAAGTCATCCATCAGGATTAGA
AGAAGCACCTTACCCACTGATTCATCTGATCGACCTCTCAGGGGTCAAAT
GCAGTGCCTTTAACTACTGAGTCACACCACCCTCCTTAAAAAGTTATTTC
TGGACTGATGAAGTGGCTCAGCACTTGCCTTACAAGGAAATTATCAACCT
GAGTTTAATCCATAGGACTCATGGTGAAAGGCAAGAACCTACTCTGGAAA
GTTGCCCTCTAGGTACCAGGAACATGGTTAAGCACTTAAGAGTACTTCTT
ACCCAGGCGTGGTGCCCCATTGCCTTAATTTCAGCTATCGCGACGCACTA
ACCCCCCGTTTTACCGCCCTCCCATTTCCCCCCGCTTCACCCACTGACTT
TCCCCATTTCTTTTTTTTTCCCCTCCCCTCCTTGTCCTTTTCATCCTACA
TTCCCCCTCTCTTTTTTTTTTTCCTCTACCCCTTATTCCCGCTTTTATTT
CTATTTCCTTACCCCCCTCTCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_g18.b1 MSMg01no411_g18.b1 CHROMAT_FILE:
MSMg01no411_g18.b1 PHD_FILE: MSMg01no411_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:27 2005
         (460 letters)



>mm_chr6_30441212_30442072
          Length = 861

 Score =  876 bits (453), Expect = 0.0
 Identities = 459/461 (99%), Gaps = 1/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaacactagatgagctcaggaactcaggggtagagcatgtgcctagtttgcctgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cacaacactagatgagctcaggaactcaggggtagagcatgtgcctagtttgcctgttca 602

                                                                       
Query: 61  gtgcccccacctcaaaaaacaaaac-aaaaaaaacccacagccttcacatcagagttctc 119
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 601 gtgcccccacctcaaaaaacaaaacaaaaaaaaacccacagccttcacatcagagttctc 542

                                                                       
Query: 120 tccaggacctcccctacttgtcattcccaggctgctttcggtctgtttgattgcaagcaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tccaggacctcccctacttgtcattcccaggctgctttcggtctgtttgattgcaagcaa 482

                                                                       
Query: 180 gtcctacatgttgctgagagtcagagccgggcagtttgtgaagctccttcattaaagctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtcctacatgttgctgagagtcagagccgggcagtttgtgaagctccttcattaaagctc 422

                                                                       
Query: 240 cattgtgggatggtctttcagttgttgagttagttcatctgtaatgttttcttaacgtat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cattgtgggatggtctttcagttgttgagttagttcatctgtaatgttttcttaacgtat 362

                                                                       
Query: 300 ttgtaaaacatagctttctacaatgttaactaaccatgctattagcacatactgaccaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgtaaaacatagctttctacaatgttaactaaccatgctattagcacatactgaccaca 302

                                                                       
Query: 360 gtcagctaccacacctcacatttgttgttttaaatgccttaccatctcaggaaatacata 419
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 301 gtcagctaccacacctcacatttgttgttttaaatgccctaccatctcaggaaatacata 242

                                                    
Query: 420 atcctgttttaaatattgtttgtttgaatcaggattcaaat 460
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcctgttttaaatattgtttgtttgaatcaggattcaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space:   382950
Effective search space used:   382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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