Query= MSMg01no411_m17.b1 MSMg01no411_m17.b1 CHROMAT_FILE:
MSMg01no411_m17.b1 PHD_FILE: MSMg01no411_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:58 2005
(423 letters)
>mm_chr6_71884230_71885044
Length = 815
Score = 723 bits (374), Expect = 0.0
Identities = 408/424 (96%), Gaps = 10/424 (2%)
Strand = Plus / Plus
Query: 1 tacagactgcttatcttagggctgctaccctgctccagccaagggaactttgaggagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagactgcttatcttagggctgctaccctgctccagccaagggaactttgaggagaac 260
Query: 61 tgacaaaggactgttgggggagggggacatgtcttcacagcccagctgacaggcttaccc 120
|||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tgac-aaggactgtggggggaggggggcatgtcttcacagcccagctgacaggcttaccc 319
Query: 121 tggtcagcttcccagtgtgccctcacaggtgggccacagaaggcttcaagacctgtttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggtcagcttcccagtgtgccctcacaggtgggccacagaaggcttcaagacctgtttcc 379
Query: 181 tcctgcttcttaactctgtgacacagatgggactagaaagagaggtgattacctctgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcctgcttcttaactctgtgacacagatgggactagaaagagaggtgattacctctgggt 439
Query: 241 ccatatcctctgttccccttacctttatgcagtttttgttgtttttggattttttggggg 300
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 440 ccatatcctctgggccccttacctttatgcagtttttgttgtttttgggtttttttggg- 498
Query: 301 ctttttgtttttttgttttttt-aatatgtccttgtggtgtgtaacgtcagctttgagga 359
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 499 -------tttttttgttttttttaatatgtccttgtggtgtgtaacgtcagctttgagga 551
Query: 360 aaagctgttctgtcaaaggagccgacaggctgggtttaaaagggcaaagtgggatcagtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaagctgttctgtcaaaggagccgacaggctgggtttaaaagggcaaagtgggatcagtg 611
Query: 420 tttg 423
||||
Sbjct: 612 tttg 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 815
Length adjustment: 9
Effective length of query: 414
Effective length of database: 806
Effective search space: 333684
Effective search space used: 333684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_m17.g1 MSMg01no411_m17.g1 CHROMAT_FILE:
MSMg01no411_m17.g1 PHD_FILE: MSMg01no411_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:58 2005
(521 letters)
>mm_chr6_72061768_72062691
Length = 924
Score = 990 bits (512), Expect = 0.0
Identities = 520/524 (99%), Gaps = 3/524 (0%)
Strand = Plus / Minus
Query: 1 aacagcagttaccacaggcaggagcaggataggcattgggggactgagaaggacgttagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 724 aacagcagttaccacaggcaggagcaggataggcattgggggactgagaaggacggtagg 665
Query: 61 gaagcaaagcaa---agaagaggcgccatcctgaaggaaactgacaacaggcttggcgga 117
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaagcaaagcaaagcagaagaggcgccatcctgaaggaaactgacaacaggcttggcgga 605
Query: 118 aggttggacactgtcccttcaagtctaaaaatccaaaaatcttatttgtttttatacttt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggttggacactgtcccttcaagtctaaaaatccaaaaatcttatttgtttttatacttt 545
Query: 178 tatttctgaagcttgccacagaaaaacctgatctttctctggttctattgtctctttcca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tatttctgaagcttgccacagaaaaacctgatctttctctggttctattgtctctttcca 485
Query: 238 aagtatgtacttgcgatttgttagcaccaaattattcttacttttcttttctctttattc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aagtatgtacttgcgatttgttagcaccaaattattcttacttttcttttctctttattc 425
Query: 298 atcctttctgaactctttcaaaggtagaatcagttgctatgccaagctggaccagagacc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atcctttctgaactctttcaaaggtagaatcagttgctatgccaagctggaccagagacc 365
Query: 358 aatattttctactccttgaccttttatacaaaattaactctttatatgtgagatgaaaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aatattttctactccttgaccttttatacaaaattaactctttatatgtgagatgaaaaa 305
Query: 418 aaaagttgtctaaatagttaatgatttttataagaattaaatgagataataatacaactg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaaagttgtctaaatagttaatgatttttataagaattaaatgagataataatacaactg 245
Query: 478 aaaacctgacccagtgcccttcgaagcttgtgttgtgggcagtt 521
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaaacctgacccagtgcccttcgaagcttgtgttgtgggcagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 924
Length adjustment: 10
Effective length of query: 511
Effective length of database: 914
Effective search space: 467054
Effective search space used: 467054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
