Query= MSMg01no412_p22.b1 MSMg01no412_p22.b1 CHROMAT_FILE:
MSMg01no412_p22.b1 PHD_FILE: MSMg01no412_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:32 2005
(495 letters)
>mm_chr6_63893160_63894054
Length = 895
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 4 ggaattccccaggtctataaaattgctttaaaattataatagcctaggttttcatagaaa 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggaattccccaggtcaataaaattgctttaaaattataatagcctaggttttcatagaaa 439
Query: 64 acctagaatatttcctagaatattttcatgtttcttgtattgcatgaaatcgggtaatta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 acctagaatatttcctagaatattttcatgtttcttgtattgcatgaaatcgggtaatta 379
Query: 124 ttttctatatacactctttcttcataatgaatgatatgaagcacaaactgtttattgaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttttctatatacactctttcttcataatgaatgatatgaagcacaaactgtttattgaac 319
Query: 184 atcagatacacaaaagcactatgtcaaaggattgtgagattatggaattctgcacaattg 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atcagatacacaaacgcactatgtcaaaggattgtgagattatggaattctgcacaattg 259
Query: 244 tgtcctgaaggtgctccttattgattttttggggagctctgagcagcacctttctttttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtcctgaaggtgctccttattgattttttggggagctctgagcagcacctttctttttt 199
Query: 304 tattagatattttcttcttttacatttcaaatgctatctcctttcctagtttcctctcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tattagatattttcttcttttacatttcaaatgctatctcctttcctagtttcctctcct 139
Query: 364 ccgaaagtcccctataccctcaccccaccctgttccccaatccacccactcccacttcct 423
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 138 ccgaaagtcccctataccctca-cccaccctgttccccaatccacccactcccacttcct 80
Query: 424 ggccatggcattcccctgtactggggcatataatcttcgcaagaccaaggggcctctcct 483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 79 ggccatggcattcccctgtactggggcatataatctttgcaagaccaaggggcctctcct 20
Query: 484 ccgcattggtgg 495
||||||||||||
Sbjct: 19 ccgcattggtgg 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_p22.g1 MSMg01no412_p22.g1 CHROMAT_FILE:
MSMg01no412_p22.g1 PHD_FILE: MSMg01no412_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:32 2005
(402 letters)
>mm_chr6_63701408_63702209
Length = 802
Score = 739 bits (382), Expect = 0.0
Identities = 397/402 (98%)
Strand = Plus / Plus
Query: 1 agtgtccatgcaacaggaagtgttagaatgacacataaaactgaagaacaaatatttagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtccatgcaacaggaagtgttagaatgacacataaaactgaagaacaaatatttagc 260
Query: 61 ctaattttatctgacctacgttacaacaaaggaataagtagaaatttggtatttcttagg 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaattttatctgacctacattacaacaaaggaataagtagaaatttggtatttcttagg 320
Query: 121 gtttggagctggaagattgatattttacttagcagtaatatcttttaaaagatagtttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttggagctggaagattgatattttacttagcagtaatatcttttaaaagatagtttaa 380
Query: 181 aattttctaataaacaaaactagaaagaagtatgaaatatattttctttatatttgttga 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttctaataaacaaaactagaaagaagtatgaaatatattttctttatatttgttga 440
Query: 241 aagtagatttttgaattataaatatagacttcaaaaagccaatatacctattatattttc 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtagacatttgaattataaatatagacttcaaaaagccaatatacctattatattttc 500
Query: 301 agttttcattatgtactggtaatgttctgataaaacattccatttactaaggattactgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttttcattatgtactggtaatgttctgataaaacattccatttactaaggattactgc 560
Query: 361 ccactgagccaaatcatagctcaataataattctcaagaatt 402
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactgagccaaatcatagctcaataataattctcaagaatt 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
