BAC Information

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BAC

Clone NameMSMg01-413E19
Chromosome6 (Build37)
Map Location 34,771,240 - 34,771,679
singlet/doubletsinglet
Overlap geneAgbl3
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1
Downstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413E19.T7 (MSMg01no413_e19.b1)MSMg01-413E19.TJ (MSMg01no413_e19.g1)
ACCAG509866AG509867
length758783
length of high quality
(start - end)
449 (31 - 479)145 (62 - 206)
definitionCHROMAT_FILE: MSMg01no413_e19.b1 PHD_FILE: MSMg01no413_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:56 2005CHROMAT_FILE: MSMg01no413_e19.g1 PHD_FILE: MSMg01no413_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTATACGACTCACTATATTCACAGATCCGCGGAATTCTCTACCCTTA
TCCAGATGAGCCATAATTGCATGACTGGGTCATGAAACTACTACACACTA
GCTCATCCTTGGTTCTTGGGTTTTAAACCAAACAAAATGAAAAAAGTCCA
CACAGTATTCATAATAGCTTTATTTATACTTGCCCAAACTGGAAGCAACC
AGATGTCTTCCAATAAATGGATGACTTTTTTTAAGTGTGTCCATATAATG
CACTATTATTCAATTATTAAAAATGAGTTGTCAAACAATAAAGATATAAC
AGAACAGATTCTTGAGTCCATATCACAACCACATCAAGTGGGTTTCATCT
CGATGAGAACAAAGTCAAAACAAACCATGGCCAAGAAATAATAACTGAGA
AAGATTTGCTACCTCTAGCAGGTACGGAGAGCCAAAAGCAATGCCTTCCT
TAAAGGCAGTGTGGGAATTTTACTTACAAAGCCTATAAAGATTAATATAA
GAAAGCACTATAAGGATGGACTTCCCTGAGCATGCTCAGCTAAGGAGTAT
ACTCTTGACCATGCTCAGTTTAATGTCATGCCACACGAAAGAATGATGGC
CCAAATTTTGTGGTATTTGTGGCTCGGGCACCTATACATAATTTGATAAT
TCTAATACGCCTTACATCCCTGTCCCTTTCTTCATTTCACATCCTACTTC
CACTTCCTAACATCATTCCCCATATATTCTGTTTCCGAACATGCTTCTAA
CCCTCCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATGAGGGCAGGGATGTGTGTCGGGTTTGCTGACTTTGG
TACACTCACCACCTGGCACGATGCTCAAAACACCACACAGTAGCTGAGCG
CTGTACGATGTGCTGTGTGGTTGATGGGTGGATGGCTGGGAGGGAGGAGG
AAGNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNTNTTNNNNNNNN
NNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNN
NTTTTTTTTTTTNNNNNNNNNNNNTNNNNNNNNNGNNNTTTTTTTTTTTT
TTTGTTTGNGGGGGGGTNTGTGGTGTTTTGGGGTTTTGGGGNNCCCCGNC
CGTTTTGGTGTTTTTGTTGGTGTGTGTGTTTGTTGGGTTGGTTTTTTTTG
GGTTTTTTTGTTTGTTTTGTNTTGGTTGTTTGTGTCTCTGTTTTTTCTTT
TTTTTTCCTGNCTTTTGTCTCCCTCTCCTCGCCTTTTTTCTTCCCTTTTC
TTCTCCCTCTTCTTGCTCGTTTTTTTTTCTTTCTCCCCCTTCTTCTTTTT
TGTTCTTTCTTTCCCTTTCTTCCTCCTCGTTCTCTTTTTCTGCCTTTTTC
TTTTTCTTCNTTTCTCTTTTTCCTCTGTTTTTTTCTCTTTTTCTCTCTCC
GTTTTCTTTTTTCTGTGGCTCCTGTCCTTGTTTTNTCTCTCTTTCCTTCC
TTTCTTGCTTTTTTGCCCCCTTTTCCTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_e19.b1 MSMg01no413_e19.b1 CHROMAT_FILE:
MSMg01no413_e19.b1 PHD_FILE: MSMg01no413_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:56 2005
         (449 letters)



>mm_chr6_34771034_34771882
          Length = 849

 Score =  812 bits (420), Expect = 0.0
 Identities = 435/440 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctctacccttatccagatgagccataattgcatgactgggtcatgaaactactacac 66
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctctacccttagacagatgagccataattgcatgactgggtcatgaaactactacac 266

                                                                       
Query: 67  actagctcatccttggttcttgggttttaaaccaaacaaaatgaaaaaagtccacacagt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actagctcatccttggttcttgggttttaaaccaaacaaaatgaaaaaagtccacacagt 326

                                                                       
Query: 127 attcataatagctttatttatacttgcccaaactggaagcaaccagatgtcttccaataa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 327 attcataatagctttatttatacttgcccaaactggaagcaaccagatgtcttccaatag 386

                                                                       
Query: 187 atggatgactttttttaagtgtgtccatataatgcactattattcaattattaaaaatga 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atggatgactttttttaagtgtgtccatataatgcactattattcaattattaaaaatga 446

                                                                       
Query: 247 gttgtcaaacaataaagatataacagaacagattcttgagtccatatcacaaccacatca 306
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 447 gttgtcaaacaataaagatataacagaacagaaacttgagtccatatcacaaccacatca 506

                                                                       
Query: 307 agtgggtttcatctcgatgagaacaaagtcaaaacaaaccatggccaagaaataataact 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agtgggtttcatctcgatgagaacaaagtcaaaacaaaccatggccaagaaataataact 566

                                                                       
Query: 367 gagaaagatttgctacctctagcaggtacggagagccaaaagcaatgccttccttaaagg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gagaaagatttgctacctctagcaggtacggagagccaaaagcaatgccttccttaaagg 626

                               
Query: 427 cagtgtgggaattttactta 446
           ||||||||||||||||||||
Sbjct: 627 cagtgtgggaattttactta 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)