BAC Information

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BAC

Clone NameMSMg01-413J16
Chromosome6 (Build37)
Map Location 66,897,394 - 67,062,812
singlet/doubletdoublet
Overlap geneGng12, LOC100042837, Gadd45a, E230016M11Rik
Upstream gene4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik
Downstream geneEG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413J16.T7 (MSMg01no413_j16.b1)MSMg01-413J16.TJ (MSMg01no413_j16.g1)
ACCAG510099AG510100
length714750
length of high quality
(start - end)
269 (41 - 309)455 (64 - 518)
definitionCHROMAT_FILE: MSMg01no413_j16.b1 PHD_FILE: MSMg01no413_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:20 2005CHROMAT_FILE: MSMg01no413_j16.g1 PHD_FILE: MSMg01no413_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,897,394 - 66,897,660)(67,062,358 - 67,062,812)
sequence
TTGCGGCCGCTAAACGACTCCTATTTCCAAGAATCCGCGGAATTCCTGGG
TTTACGACTTCATGTTGCCTCCCAAGGAGCCATAGAGTAGTTAGTACCTG
GAGGCAGTGGAGCTTCAGTGGATCTGCGGACTCCGTAACGATTTACAAAA
CTGTGCAGGAGAGATCTTGTGTTCCATCACACTCTCCCTGGACCCCACTG
ACAAACCATTGTTTGACTTAACTGTAGCTGTTTTCAATTTGGCTAGTCTA
GTCTCTGGCATTAGCCTCTGTTCTTGGCTCACCTATTGAAGCTTAGTGTC
CATTATATTTTTGTTCTGCTTGTGGGACAGACAGTGATGTCAGTGGCTGA
GCATTCTGCCTTAAATTATATACTGAGTTTTCCAGCTTTATGTATAAGGT
TTTCACAGTCATAGCTGCCATTTACCTAATGCCAGGTTCTACTAAATACT
TCATGTGCATTATCTGAACTGCATATTTCTACATGACTAACTCCAAGAAC
CTCAAATCTGTCCCAGTACATGCTGCTGGGACCAGCACCTTCCGGCTGCC
ATTCTGGAAGCACAAGACAAGTCTCTCTTGTTCTTCTTACATCTGTGTGT
TCACCTTTCCATACACAGGTAGTAGGATCAAAGCCTCAACATTGGAAGAC
ACTGCTAAAACCCTGTGGTTCTTTGGCTCCACAGCTTTATTCCAGACCCT
CACTGCCTTAATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGGGCTAGCCAGGGAGTGGCGGTGCACACACTCGGG
AGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG
TGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGATAAAA
ACAAAACCAAACCAAACAAAAAAAGAATTCCATGGCTGGAGGAAAATGTG
GGGAGCTATTCTGTCAGTGCCAGAGGAGGCTTGGGTGTGATTTGCAGACG
CTAATTAGATTCTCTTTCATTCTCTGAGCGCCAAGCACTTTCCCCCAGTT
GGTCTGCTAATATTAGCCCTGGCCCTCAAGCATAATTAGTCCTAGTGGGA
GCCGAACAACCAAAGGAAAAACACTGGACCTTGGTCGGCCTCCTGCCCTG
TGCATCTTTTCCTGGAAGAAGTGGTTTTAGCTTTGCCTTTTACTACCACA
CTACTTTTTGGCAGCCCAGTTCTGAAAATAATTTGTGGTTGCTTTGACTC
TCAATGTACAGATTTGGGGTGCAAAAATATGCCACATCGTTTATTTTTCA
AAAGCTTTAAGCTCATCTTTGTCAAAATGAATCTTCCGCCTCTCTTGGTT
TATGCTAAACCCCTCCTCCCTTTTGATGAGCATGGTTGATTATCTGTGTA
GGAACCTTCTAACTTCCCAGGGGGTGGGGTTTATGATGGTGTAGCGTCTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_j16.b1 MSMg01no413_j16.b1 CHROMAT_FILE:
MSMg01no413_j16.b1 PHD_FILE: MSMg01no413_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:20 2005
         (269 letters)



>mm_chr6_66897194_66897862
          Length = 669

 Score =  493 bits (255), Expect = e-144
 Identities = 264/267 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcctgggtttacgacttcatgttgcctcccaaggagccatagagtagttagtacctg 60
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcctgggttgaggacttcatgttgcctcccaaggagccatagagtagttagtacctg 260

                                                                       
Query: 61  gaggcagtggagcttcagtggatctgcggactccgtaacgatttacaaaactgtgcagga 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gaggcagtggagcttcagtggatctgcggactccgtaatgatttacaaaactgtgcagga 320

                                                                       
Query: 121 gagatcttgtgttccatcacactctccctggaccccactgacaaaccattgtttgactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatcttgtgttccatcacactctccctggaccccactgacaaaccattgtttgactta 380

                                                                       
Query: 181 actgtagctgttttcaatttggctagtctagtctctggcattagcctctgttcttggctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtagctgttttcaatttggctagtctagtctctggcattagcctctgttcttggctc 440

                                      
Query: 241 acctattgaagcttagtgtccattata 267
           |||||||||||||||||||||||||||
Sbjct: 441 acctattgaagcttagtgtccattata 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no413_j16.g1 MSMg01no413_j16.g1 CHROMAT_FILE:
MSMg01no413_j16.g1 PHD_FILE: MSMg01no413_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:20 2005
         (455 letters)



>mm_chr6_67062015_67062869
          Length = 855

 Score =  833 bits (431), Expect = 0.0
 Identities = 449/455 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggctagccagggagtggcggtgcacacactcgggaggcagaggcaggtggatttctg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cagggctagccagggagtggtggtgcacacactcgggaggcagaggcaggtggatttctg 739

                                                                       
Query: 61  agttcgaggccagcctggtctacagagtgagttccaggacagccagagctacacagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agttcgaggccagcctggtctacagagtgagttccaggacagccagagctacacagagaa 679

                                                                       
Query: 121 accctgtctcgataaaaacaaaaccaaaccaaacaaaaaaagaattccatggctggagga 180
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 678 accctgtctcgacaaaaaccaaaccaaaccaaacaaaaaaagaattccatggctggaggg 619

                                                                       
Query: 181 aaatgtggggagctattctgtcagtgccagaggaggcttgggtgtgatttgcagacgcta 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 618 aaatgtggggagctattctgtcagtgccagaggaggcttcggtgtgatttgcagacgcta 559

                                                                       
Query: 241 attagattctctttcattctctgagcgccaagcactttcccccagttggtctgctaatat 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 attagatcctctttcattctctgagcgccaagcactttcccccagttggtctgctaatat 499

                                                                       
Query: 301 tagccctggccctcaagcataattagtcctagtgggagccgaacaaccaaaggaaaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tagccctggccctcaagcataattagtcctagtgggagccgaacaaccaaaggaaaaaca 439

                                                                       
Query: 361 ctggaccttggtcggcctcctgccctgtgcatcttttcctggaagaagtggttttagctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctggaccttggtcggcctcctgccctgtgcatcttttcctggaagaagtggttttagctt 379

                                              
Query: 421 tgccttttactaccacactactttttggcagccca 455
           |||||||||||||||||||||||||||||||||||
Sbjct: 378 tgccttttactaccacactactttttggcagccca 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)