BAC Information

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BAC

Clone NameMSMg01-414A12
Chromosome6 (Build37)
Map Location 15,303,375 - 15,303,625
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414A12.T7 (MSMg01no414_a12.b1)MSMg01-414A12.TJ (MSMg01no414_a12.g1)
ACCAG510423AG510424
length772775
length of high quality
(start - end)
604 (45 - 648)251 (76 - 326)
definitionCHROMAT_FILE: MSMg01no414_a12.b1 PHD_FILE: MSMg01no414_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:54 2005CHROMAT_FILE: MSMg01no414_a12.g1 PHD_FILE: MSMg01no414_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCATGAAGTTCTTACGCAAATGGATGGAACTAGAAAACATCATCCTG
AGTGAGGTATCCCAATCACAAAAGACCACACATGGTATGTGCTCATGGAT
AAATGGTTATTAGCCCAGAAGTTTGGAATGCTCAAGATACAATTTATAGA
CCACATGAAATTCAAGAAGAAGGAAGACCACAATGTGGATACTTTGGTCT
TCTTAGAAGGGTGATCAAAATACCCATGAGAGGAGATATAAATTTTGGAG
CAAAAACTGAAAGAAAGGCCATCCAGTGTCTGTCCCACCTGGGGATCCAT
CCCATATACAGCTCTCAAACCCAGACACTATTGTGGATGCCAACAAGTGC
TTGCTAACAGGAGCCTGATAATAGCTGTCTTCTGAGAGGCTTTGCCAGTG
CCTGACAATTACAGACATGCTCACAGCCATCCATTGGATTGAGCAAAGGG
TCCCCAATTGAGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGAGGTTTGC
AACCCCATAAGAAGAACAACAATATGAACCAACCAGTACCCCCCAGAGCT
CCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGGACTCAAGACT
CTAGCCACATATGTAGCAGAGGATGTTCTTGTGGAACTCAGTGAGAGGAG
AGGCCCTCGGTCTTGTGAAGGTTCTTTGTCCCAGTGTATTCCCCTACCTT
GTCACAAAAGGTAACATGAATG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCACTATTGAGCCCCGTCAATGCT
GTTTGTGTGCATGGATATTGATAGTCCTTGAGGAGCCACATGTTGTAGCA
GCTAGCACTTGCAAGGCTGTGATACATAGATGTCAGAATGTTCTCGCTTG
CTCTGGAGAACACTGTATATTCTTTAAATGTGATGTTTGCTATGGGTTTC
TATAGATGTTTTATCGTCTTGGAAAGAAGTTCCCATGCAGTCCTCATCTG
CCAAGGGGTTTCACCCAGAACAGGTGTCGTTTTTGTAGCAGTTTTCCTGC
ATACACTGTGATAATCCTATAATCTTTCTTTCAATTAACTTACTGTAGTA
AATCTTATTATTAATTTGAGATATTAAAGTAAGTGTAAGGAAGAGTATAT
AACACTGGTATTATTTGTTGAATTGAAGAATTCACTGCTCCAATCAGCCC
AAAGATCTTTTTATGAGAAACTTTCTAGTTCAATTTTGTCAATACATATG
GGACTTTTTGGATTTACTCCAACTTTTGATAACGTATTTTTTCAGGATTT
TGACCAACTTACCTAGTACGAAATTCCCTGTAAATACTTTTTCTAACATT
CTCTTGTCCTAATACCTGTTCTTTGTTTTGTTTCATTTTTTTCAAATTTT
TAGTCCCTTTACATGGTATTCTCTTTTTCTCATAGACCTCTTCTGTTTTA
TTTTATTCATTTCTTTCTTCTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_a12.g1 MSMg01no414_a12.g1 CHROMAT_FILE:
MSMg01no414_a12.g1 PHD_FILE: MSMg01no414_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:54 2005
         (251 letters)



>mm_chr6_15303175_15303825
          Length = 651

 Score =  462 bits (239), Expect = e-135
 Identities = 248/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccactattgagccccgtcaatgctgtttgtgtgcatggatattgatagtccttgaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tccactattgagccccgtcaatgctgtttgtgtgcatggatattgatagtcctcgaggag 260

                                                                       
Query: 61  ccacatgttgtagcagctagcacttgcaaggctgtgatacatagatgtcagaatgttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacatgttgtagcagctagcacttgcaaggctgtgatacatagatgtcagaatgttctc 320

                                                                       
Query: 121 gcttgctctggagaacactgtatattctttaaatgtgatgtttgctatgggtttctatag 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gcttgctctggagaacactgtatattctttaagtgtgatgtttgctatgggtttctatag 380

                                                                       
Query: 181 atgttttatcgtcttggaaagaagttcccatgcagtcctcatctgccaaggggtttcacc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 atgttttatcgtcttggaaagaagttcccatgcagtcctcatctgccaaggggtttcatc 440

                      
Query: 241 cagaacaggtg 251
           |||||||||||
Sbjct: 441 cagaacaggtg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)