BAC Information

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BAC

Clone NameMSMg01-415L02
Chromosome6 (Build37)
Map Location 67,884,029 - 67,884,568
singlet/doubletsinglet
Overlap geneIgk
Upstream geneGng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218
Downstream geneEG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415L02.T7 (MSMg01no415_l02.b1)MSMg01-415L02.TJ (MSMg01no415_l02.g1)
ACCAG511691AG511692
length722723
length of high quality
(start - end)
544 (42 - 585)510 (70 - 579)
definitionCHROMAT_FILE: MSMg01no415_l02.b1 PHD_FILE: MSMg01no415_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:08 2005CHROMAT_FILE: MSMg01no415_l02.g1 PHD_FILE: MSMg01no415_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTCAATTCCATTCCACAGTCTCCCTATGCTGCTCATTCTGCTTTATTT
TGCTTTCTTTTCTTTCATAATATTCATTAGAAATTAAAAATATAAGTCAT
CTATTCTCCTCTTCCCTTTAACTCTGAAAAACTTATTCTCACCAATTTCA
TTTCAAATACAATTTTTAGTTGACTCAGTGATTGAATTTTCTTTCCTTGC
ATGGGTATGAATTGGGACTTATTTACTAGAACATAACAGTTTTTCAATGG
CTACATCACTGAGGAAAATGTCACAGCCTTTCCTAGCAGCTATTAACTGC
TAATAGGCTGTTACTGAAGAGTAGGAACTCATTAGACCATTCTTTTTCAT
GATAAAATAATGTTGTATCTAATTTTGAGAAGGTAAGCATAGTATCGTGC
TTATGAGTACAGGGACTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACA
TCATGACCAAGAAGCAAGCTGGGGAGGAAAGGGTTTATTTGGCTTACACT
TCCATACTGCTGTTCATCACCAAAGGAAGTTAGGACTGGAACTCCAGCAG
GTCAGAAAGCAGGAGCTGATGCAGAGGCTATGGAGGGATGCTCCTTACCG
GCTTGCTTCCCCCGGCTTGTTCAATCTGCTCTTTTATACAATCCATGTCT
ACTCGTCCACATACGGTGCTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGATAATTCTGCACTATGGCTGCCTGGAT
GCTGCTCTGTTCCTACCCTGATGATAATGGACTGAACCTCTGAACCTGCA
AGCCAGCCCTAATTAATTGTTGTTTTTCATAAGACTTGCCTTGGCCACAG
GTGTCTGTTCACAGCAGTTAAACCCTGACTAATACACTAGTGGATAGGCA
CAGTCCCCTGTTGAGGGATGGGAGCACCTACCTCAAAAATATTAATCCAG
AATTCCTTCTGTCAAAAGGAAACACAGGGATAAAGAGTGGAGCAGAGTCT
GAAGGAAAGGCCATCCAGAGACTGCTCCACCTAGGGATCCATCCCATCTG
CACTCACCAAAACTAGACACTATTGCTCATGTCAAGAAATGTTTGCTGAC
AGCAGCCTGGTATAGCTATCCCCTGAGAAGCTCTGCCAGGCCCTGACCAA
TACAGAAGTGGATGCGTGCAGCCTAACATCGGACTAAGCTCAGGGACCCC
AATGGAAAAGTTAGAGCAAGGACTGAAGGAGCTGAAGAGGTTTGCAAACA
CATAGAAAGGACAAGAATATCATCCAACCATGCCCCCATATTTCTCAGGG
ACATACAATCAACCAAAAAGTACACCTATGGATGCCCATGGTTCCCTATG
AATATGCAATAAAGGACTGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_l02.b1 MSMg01no415_l02.b1 CHROMAT_FILE:
MSMg01no415_l02.b1 PHD_FILE: MSMg01no415_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:08 2005
         (544 letters)



>mm_chr6_67883825_67884768
          Length = 944

 Score =  982 bits (508), Expect = 0.0
 Identities = 532/540 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcaattccattccacagtctccctatgctgctcattctgctttattttgctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcaattccattccacagtctccctatgctgctcattctgctttattttgctt 264

                                                                       
Query: 65  tcttttctttcataatattcattagaaattaaaaatataagtcatctattctcctcttcc 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttttcattcataatattcattagaaattaaaaatataagtcatctattctcctcttcc 324

                                                                       
Query: 125 ctttaactctgaaaaacttattctcaccaatttcatttcaaatacaatttttagttgact 184
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 ctttaactctgaaacacttattctcaccaatttcatttcaactacaatttttagttgact 384

                                                                       
Query: 185 cagtgattgaattttctttccttgcatgggtatgaattgggacttatttactagaacata 244
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 385 cagtgattgaattttctttccttgcatgggtatgaattggggctaatttactagaacata 444

                                                                       
Query: 245 acagtttttcaatggctacatcactgaggaaaatgtcacagcctttcctagcagctatta 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagtttttcaatggctacaccactgaggaaaatgtcacagcctttcctagcagctatta 504

                                                                       
Query: 305 actgctaataggctgttactgaagagtaggaactcattagaccattctttttcatgataa 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actgctaataggctgttactaaagagtaggaactcattagaccattctttttcatgataa 564

                                                                       
Query: 365 aataatgttgtatctaattttgagaaggtaagcatagtatcgtgcttatgagtacaggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aataatgttgtatctaattttgagaaggtaagcatagtatcgtgcttatgagtacaggga 624

                                                                       
Query: 425 ctgtcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagctgggga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 ctgtcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagttgggga 684

                                                                       
Query: 485 ggaaagggtttatttggcttacacttccatactgctgttcatcaccaaaggaagttagga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaaagggtttatttggcttacacttccatactgctgttcatcaccaaaggaagttagga 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)