BAC Information

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BAC

Clone NameMSMg01-416E10
Chromosome6 (Build37)
Map Location 147,175,417 - 147,349,069
singlet/doubletdoublet
Overlap genePthlh
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641
Downstream geneEG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416E10.T7 (MSMg01no416_e10.b1)MSMg01-416E10.TJ (MSMg01no416_e10.g1)
ACCAG512133AG512134
length716753
length of high quality
(start - end)		489 (13 - 501)375 (76 - 450)
definitionCHROMAT_FILE: MSMg01no416_e10.b1 PHD_FILE: MSMg01no416_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:52 2005CHROMAT_FILE: MSMg01no416_e10.g1 PHD_FILE: MSMg01no416_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,175,417 - 147,175,891)(147,348,695 - 147,349,069)
sequence
CTTCCTATTTCGAGAGGATCCGCGGAATTCCCCAGTGTGCGGCCATCTAG
AAGGTGTGTGGGCTGTGCGCTCCATTGAGGACCATTCTTCCCTCTGCTAG
TAGCAAAGATGGTTTTGAGGTCAGGATTTCAGGCTTAGAGCTGAGTAGAA
GTAGAATAGAGCTTTTACTTCCTCATTAAGAAGAGACTCTACATTTCCAT
TAGGTACAATGCCACCCCAGAGCTTGCTTGAAGTTCTGCTCTTCATCGTG
GGCAAGCATTGTTACCAGTCAACTGCCCACTTCCAGCATTGTGGTAATTA
TTTGATCTTTTATTAAAGAAAATTCTTCCAAAAATATTAATTTAAAAAAT
TATTGTCAACACGTTCTGACATTCCATCCCTGAATGTTGAAGAAGAAAAA
AAGCTTTAGAGTTTTTTAATAATCTTGGTAAATATTATTTGAACTTTACT
TCAAGCCAAAACAAGTTTCATGGGGGGAAAAATCCTTTCTTCTGCCATGT
GCAATAAATTTGGCCAGGAGGATCTGGAAGCAAGAAATCCAACAAGCTAA
ATACTAAGTGGGCATTCATGCCAGTGGACGCCTTGAGTGCGGGAGTGAGA
AAAATTCTTTTAAAAACCCTTTTAAATTCCTGGGTTATCAATGAGTTTTC
TTTTCTGAGCAATGTAGAGGTTTCTCCCTCCTCTTTCCTGGAGAATCGTA
GTTAATGGAACCGGTN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATCAGAGATTCAGGCCGCCTTTC
AGTGAATTTCCCAGTCTTTTCCCTGATCAAATGCTGTGCAGAATGACCCA
GTTATTACTGGTTACAAAATGGTGTCATGAGTTCTCTTTCATCTCTGATA
AAAAATGTGTTTAAAGAAAGAAGAGAAACATTGCCCTGTGCCCAGACAGT
ACTCAGGTACGTGATACTTCCATGTTAATTAAATTGTTGGGAGTGGGACT
TGAAACCTGTAGCATATCAGACCTTTTTTTGTTTCTTCCCACCTCACACC
CCACCCCCACCCCACACACACTTTTAGACTTCTGCTTTAAAGTGTGGAGA
GTAAATGGAGGCTCAAAGCTGACTACAGCACACCAAGGGAACCCTGGCTA
ACAGCATACAGAACGAGAGACACTAGATAAGCTAGTCTTTTACCTCAGGA
AACCTGAGGCTTTTCTTTCCTCTGGAAATAGTTCACATTGACCCTCATTG
GAAGTGAAAGTTGCACATAAAGTCAGGACACCGCCTAAAAGTGATGTGCC
CTCGAAAAAAGCTGGGTAACCTTTTCTTACGCTTCGCGTATAAAAAAAAT
CCTTTTTCTTTCTTGATTTTTAATGCTCACATAAAATTTCTTTAGTTCAC
ATTTAGAGCGATTTTATACTTATTATAATTTACAATTACTATGTTATATT
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_e10.b1 MSMg01no416_e10.b1 CHROMAT_FILE:
MSMg01no416_e10.b1 PHD_FILE: MSMg01no416_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:52 2005
         (489 letters)



>mm_chr6_147175205_147176093
          Length = 889

 Score =  911 bits (471), Expect = 0.0
 Identities = 474/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaattccccagtgtgcggccatctagaaggtgtgtgggctgtgcgctccattgaggacca 72
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattccccagtgtgtggccatctagaaggtgtgtgggctgtgcgctccattgaggacca 272

                                                                       
Query: 73  ttcttccctctgctagtagcaaagatggttttgaggtcaggatttcaggcttagagctga 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttcttccctctgctagtagcaaagatggttttgaggtcaggatttcaggcttagagctga 332

                                                                       
Query: 133 gtagaagtagaatagagcttttacttcctcattaagaagagactctacatttccattagg 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtagaagtagaatagagcttttacttcctcattaagaagagactctacatttccattagg 392

                                                                       
Query: 193 tacaatgccaccccagagcttgcttgaagttctgctcttcatcgtgggcaagcattgtta 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tacaatgccaccccagagcttgcttgaagttctgctcttcatcgtgggcaagcattgtta 452

                                                                       
Query: 253 ccagtcaactgcccacttccagcattgtggtaattatttgatcttttattaaagaaaatt 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccagtcaactgcccacttccagcattgtggtaattatttgatcttttattaaagaaaatt 512

                                                                       
Query: 313 cttccaaaaatattaatttaaaaaattattgtcaacacgttctgacattccatccctgaa 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cttccaaaaatattaatttaaaaaattattgtcaacacgttctgacattccatccctgaa 572

                                                                       
Query: 373 tgttgaagaagaaaaaaagctttagagttttttaataatcttggtaaatattatttgaac 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgttgaagaagaaaaaaagctttagagttttttaataatcttggtaaatattatttgaac 632

                                                                  
Query: 433 tttacttcaagccaaaacaagtttcatggggggaaaaatcctttcttctgccatg 487
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tttacttcaagccaaaacaagtttcatggggggaaaaatcctttcttctgccatg 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_e10.g1 MSMg01no416_e10.g1 CHROMAT_FILE:
MSMg01no416_e10.g1 PHD_FILE: MSMg01no416_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:52 2005
         (375 letters)



>mm_chr6_147348495_147349269
          Length = 775

 Score =  725 bits (375), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcagagattcaggccgcctttcagtgaatttcccagtcttttccctgatcaaatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcatcagagattcaggccgcctttcagtgaatttcccagtcttttccctgatcaaatgct 516

                                                                       
Query: 61  gtgcagaatgacccagttattactggttacaaaatggtgtcatgagttctctttcatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtgcagaatgacccagttattactggttacaaaatggtgtcatgagttctctttcatctc 456

                                                                       
Query: 121 tgataaaaaatgtgtttaaagaaagaagagaaacattgccctgtgcccagacagtactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgataaaaaatgtgtttaaagaaagaagagaaacattgccctgtgcccagacagtactca 396

                                                                       
Query: 181 ggtacgtgatacttccatgttaattaaattgttgggagtgggacttgaaacctgtagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtacgtgatacttccatgttaattaaattgttgggagtgggacttgaaacctgtagcat 336

                                                                       
Query: 241 atcagacctttttttgtttcttcccacctcacaccccacccccaccccacacacactttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atcagacctttttttgtttcttcccacctcacaccccacccccaccccacacacactttt 276

                                                                       
Query: 301 agacttctgctttaaagtgtggagagtaaatggaggctcaaagctgactacagcacacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agacttctgctttaaagtgtggagagtaaatggaggctcaaagctgactacagcacacca 216

                          
Query: 361 agggaaccctggcta 375
           |||||||||||||||
Sbjct: 215 agggaaccctggcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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