Query= MSMg01no416_f15.b1 MSMg01no416_f15.b1 CHROMAT_FILE:
MSMg01no416_f15.b1 PHD_FILE: MSMg01no416_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:57 2005
(610 letters)
>mm_chr6_20838265_20839275
Length = 1011
Score = 1062 bits (549), Expect = 0.0
Identities = 602/635 (94%), Gaps = 25/635 (3%)
Strand = Plus / Plus
Query: 1 aattttgaatggaatatagactagaagaaagtatttactcttgtcttgaacttaaactat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 177 aattttgaatggaatatagactagaagaaagtatttattcttgtcttgaacttaaactat 236
Query: 61 aaagaaacattcaattttcatcatatttcatattacatattgtatgttcaaaatatgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaagaaacattcaattttcatcatatttcatattacatattgtatgttcaaaatatgtga 296
Query: 121 cagaatttcacatggactttaaaaaaatattctttattaaatagattacatttctttcct 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cagaatttcatatggactttaaaaaaatattctttattaaatagattacatttctttcct 356
Query: 181 ttggtagattgac------------------------tgtgtgtgtgtgtgtgtgtgtgt 216
||||||||||||| |||||||||||||||||||||||
Sbjct: 357 ttggtagattgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 416
Query: 217 gtattcacggttatgttaggaaatttcaactgttgtttggtatattgagatgatttataa 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtattcacggttatgttaggaaatttcaactgttgtttggtatattgagatgatttataa 476
Query: 277 ttttattacttaagtgcaataataaaataagttatcaaaagtaaatcattttattagtaa 336
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 477 ttttattacttaagtgcaataataaaataagttgtcaaaagtaaatcatttaattagtaa 536
Query: 337 aactacaagaaaaaataaaagatgattcatattctgc-aaaaaatctaaacactgctact 395
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 537 aactacaagaaaaaataaaagatgattcatattctgcaaaaaaatctaaacactactacc 596
Query: 396 cctactaatactaactgccttagtcagggtttctattcctgcacaaacatcatgaccaag 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cctactaatactaactgccttagtcagggtttctattcctgcacaaacatcatgaccaag 656
Query: 456 aagcaaattgggaaggaaagggtttattcagcttacacttccacattgctgttaatcacc 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aagcaaattgggaaggaaagggtttattcagcttacacttccacattgctgttaatcacc 716
Query: 516 gaagcaggtcagaactggaacgctcaagcaggccaggaagcaggagctgatgcagaggcc 575
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaagcaggtcagaactggaactctcaagcaggccaggaagcaggagctgatgcagaggcc 776
Query: 576 atgaagggatgttccttactggcttgcttcccctg 610
|||||||||||||||||||||||||||||||||||
Sbjct: 777 atgaagggatgttccttactggcttgcttcccctg 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_f15.g1 MSMg01no416_f15.g1 CHROMAT_FILE:
MSMg01no416_f15.g1 PHD_FILE: MSMg01no416_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:57 2005
(557 letters)
>mm_chr6_20998404_20999361
Length = 958
Score = 1033 bits (534), Expect = 0.0
Identities = 552/558 (98%), Gaps = 2/558 (0%)
Strand = Plus / Minus
Query: 1 ctgtatgtgagaatatgtatctgtgcatctaatatgagtttctggtgctttttattctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ctgtatgtgagaatatgtatctgtgcatctaatatgagtttctggtgctttttattctgt 889
Query: 61 ttgcttcctttgtcctatcaaagtctgatttttgtttcagtttattttattattattctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ttgcttcctttgtcctatcaaagtctgatttttgtttcagtttattttattattattctc 829
Query: 121 tagattgttgatggctctgcagcaagagacaaaaagagagtggattcaggtcgaaggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tagattgttgatggctctgcagcaagagacaaaaagagagtggattcaggtcgaaggaga 769
Query: 181 aaggtagaagattgcctagcaattaggtggcagtggtggagggaacccctaatcacaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 aaggtagaagattgcctagcaattaggtggcagtggtggagggaacccctaatcacaata 709
Query: 241 tattgtatgaaaaacaatcatttgcataaaagtaataataaagaaaaaatatattaaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tattgtatgaaaaacaatcatttgcataaaagtaataataaagaaaaaatatattaaaac 649
Query: 301 atatttttt-atgttgtactcttcctaaggccgaatatccatttagagctttaaaatcct 359
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 648 gtatttttttatgttgtactcttcctaaggtcgaatatccatttagagctttaaaatcct 589
Query: 360 tttatggagacccaatttcaagtattttgaaagattttaaaaacctaaaaatgattgtat 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tttatggagatccaatttcaagtattttgaaagattttaaaaacctaaaaatgattgtat 529
Query: 420 caaaaaa-tctagtattgtatttttaaaatttaatcaaaaggaaaatatgtataattttt 478
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caaaaaaatctagtattatatttttaaaatttaatcaaaaggaaaatatgtataattttt 469
Query: 479 tattagaaaatatgtaataaattttattaaagtacaaagtattagtatattaattattct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tattagaaaatatgtaataaattttattaaagtacaaagtattagtatattaattattct 409
Query: 539 caagtacatcttcaaatt 556
||||||||||||||||||
Sbjct: 408 caagtacatcttcaaatt 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
