Query= MSMg01no417_k04.b1 MSMg01no417_k04.b1 CHROMAT_FILE:
MSMg01no417_k04.b1 PHD_FILE: MSMg01no417_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:34 2005
(619 letters)
>mm_chr6_106439097_106440115
Length = 1019
Score = 1174 bits (607), Expect = 0.0
Identities = 613/615 (99%)
Strand = Plus / Plus
Query: 5 gaattcccttataacttgctacaaagtgcttgacacatgcttattcctttggcttataga 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttagaacttgctacaaagtgcttgacacatgcttattcctttggcttataga 264
Query: 65 ggcagggcctctctaagtcaacttccagggtatctcctacacttcttgaaataaaacatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcagggcctctctaagtcaacttccagggtatctcctacacttcttgaaataaaacatt 324
Query: 125 atggactgatagtaaccagcctttatgtgactatgattacctcccatttatattttacaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggactgatagtaaccagcctttatgtgactatgattacctcccatttatattttacaa 384
Query: 185 ggtgaagagcagcaatctaagtttccaccttgatcatttctgttctacatgtagcaaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgaagagcagcaatctaagtttccaccttgatcatttctgttctacatgtagcaaagt 444
Query: 245 tccaggaccaaagacatattcacagtgatgattcttatccttgcagagctgagctatgcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccaggaccaaagacatattcacagtgatgattcttatccttgcagagctgagctatgcc 504
Query: 305 tggatcttcaatgaatacccttcctatcaggataaccgccgcttcgtttctcaagagact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggatcttcaatgaatacccttcctatcaggataaccgccgcttcgtttctcaagagact 564
Query: 365 gggaatctgtatattgccaaagtggaaaaatctgatgttggtaattacacctgtgtagtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggaatctgtatattgccaaagtggaaaaatctgatgttggtaattacacctgtgtagtt 624
Query: 425 accaacactgtgaccaaccacaaggtcctgggaccgcccacaccactaatcctgagaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accaacactgtgaccaaccacaaggtcctgggaccgcccacaccactaatcctgagaaat 684
Query: 485 gatggtgagttgtctacataatgttgtcagttctggttatgaggattatggtggagtgtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatggtgagttgtctacataatgttgtcagttctggttatgaggattatggtggagtgtg 744
Query: 545 gaaagatactgtattattgtcatataatgctataaagaaaagcttaataatttctatatt 604
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 gaaagatactgtattattgtcatataatgttataaagaaaagcttaataatttctatatt 804
Query: 605 tggtacctattaatt 619
|||||||||||||||
Sbjct: 805 tggtacctattaatt 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_k04.g1 MSMg01no417_k04.g1 CHROMAT_FILE:
MSMg01no417_k04.g1 PHD_FILE: MSMg01no417_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:34 2005
(503 letters)
>mm_chr6_106602099_106603001
Length = 903
Score = 750 bits (388), Expect = 0.0
Identities = 463/505 (91%), Gaps = 32/505 (6%)
Strand = Plus / Minus
Query: 1 caggcagggctggtgtatctatgtcatctatatctcacatatatgttttatatgtgtata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 899 caggcagggctggtgtatctatgtcatctatatctcacatatatgttttata--tgtata 842
Query: 61 tatatatatatatacatatatatatatagagagagagttgataatatatactcaaatatt 120
| ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 841 tgtatatat------atatatatatat--------agttgataatatatactcaaatatt 796
Query: 121 atattcaaataa-atat-----atatatgtatatgtatacatatattttcaatatataac 174
|||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 795 atattcaaataatatattgaaaatatatgtata--catacatatattttcaatatataac 738
Query: 175 atacatgtgatatgtatatatgtatatacacatatgatatgttgtgatgttgtggaaagg 234
||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 737 atacatgtgatatgtatttatgtatatacacatatgat--------atgttgtggaaagg 686
Query: 235 aaaggaagtataaggaaggcagggaaggatatgagagggtaacttaacaatgcccataat 294
|||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 685 aaaggaagcataaggaaggctgggaaggatatgagagggtaacttaccaatgcccataat 626
Query: 295 gcacatgtataaaattgccacaataaaatgaataattttacactgaatatacactattta 354
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtacatgtataaaattgccacaataaaatgaataattttacactgaatatacactattta 566
Query: 355 aaaattattatcatatgggaaaataattccatttaaaaatgttcatgtgtcttgctgtga 414
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 565 aaaattattatcatatgggaaaataactccattttaaaatgttcatgtgtcttgctgtga 506
Query: 415 ngaaagggatgcatatatttcatgcacatgcagaggtaaaacatttactttgtgtgccag 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaaagggatgcatatatttcatgcacatgcagaggtaaaacatttactttgtgtgccag 446
Query: 475 tccatgctctctaccctgcttgaca 499
|||||||||||||||||||||||||
Sbjct: 445 tccatgctctctaccctgcttgaca 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
