Query= MSMg01no417_l03.b1 MSMg01no417_l03.b1 CHROMAT_FILE:
MSMg01no417_l03.b1 PHD_FILE: MSMg01no417_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:39 2005
(628 letters)
>mm_chr6_109858144_109859171
Length = 1028
Score = 1139 bits (589), Expect = 0.0
Identities = 616/625 (98%), Gaps = 1/625 (0%)
Strand = Plus / Plus
Query: 5 gaattctataatcttaaagcacatacttcagcaatttttagtatatttctcatgttgtta 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatattcttaaagcacatacttcagcaatttttagtatatttctcatgttgtta 264
Query: 65 accattttgtctcatcccagaaaagtttaacttgctgaaaagcaactaccttccaaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accattttgtctcatcccagaaaagtttaacttgctgaaaagcaactaccttccaaagga 324
Query: 125 atctcattaatttataataattcttaattaactcttaatttaaatcatatgtaaatgtca 184
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 atctcattaattcataataattcttaattaactcttaatttaaaccatatgtaaatgtca 384
Query: 185 cctttatttccacaaaagaagtggtaagatgataagcttacttaggctgtgtgactatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 cctttatttccacaaaagaagtggtaagatgataagcttacttaggctgtgtgactacat 444
Query: 245 ggcctgggttcagcccagagcatttccttctctgttctaattatccataggcctaggcct 304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcctgggttgagcccagagcatttccttctctgttctaattatccataggcctaggcct 504
Query: 305 agaagcttctataagaacttccagaaatagactaaataatgctttattaactttagtttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaagcttctataagaacttccagaaatagactaaataatgctttattaactttagtttt 564
Query: 365 tgaatgctaatgaggcaggaacaacagctactgaaaaatgctaaattgtaggaaaaaagc 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 tgaatgctaatgaggcaggaacaacagctactgaaaaacgctaaattgtaggaaaaaagc 624
Query: 425 aaaaagcataaaccaaaaccaaaactattgaattaaaccaacctgtatactttaaagatg 484
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaagcataaaccaaaatcaaaactattgaattaaaccaacctgtatactttaaagatg 684
Query: 485 ttttaacatcagaatggacatcagaaaatgtattacaattttctgaggagccaccagact 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttaacatcagaatggacatcagaaaatgtattacaattttctgaggagccaccagact 744
Query: 545 gatttccagagtggttgtacaagcttgcactcccaccaacaacggatgagtgtccctctt 604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 gatttccagagtggttgtacaagcttgcactcccaccaacaatggatgagtgtccctctt 804
Query: 605 tctc-acatcctcgccagcacctgc 628
|||| ||||||||||||||||||||
Sbjct: 805 tctccacatcctcgccagcacctgc 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_l03.g1 MSMg01no417_l03.g1 CHROMAT_FILE:
MSMg01no417_l03.g1 PHD_FILE: MSMg01no417_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:39 2005
(514 letters)
>mm_chr6_110077521_110078434
Length = 914
Score = 830 bits (429), Expect = 0.0
Identities = 463/475 (97%), Gaps = 2/475 (0%)
Strand = Plus / Minus
Query: 40 gatgaagatcatttgctgctctttcagaaaacccaggtttggtttccattatctacactg 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gatgaagatcatttgctgctctttcagaaaacccaggtttggtttccattatctacactg 855
Query: 100 tgcctcacaagtatctgtaactccagtttcagagaatctgaaatatttttctagtctccg 159
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 854 tgcctcacaagtatctgtaactccagtttcagataatctgaaatatttttctagtcttcg 795
Query: 160 cagacaacaggaaggcatgtattgtggtacacaa--acacacacacaggcaaaacaccca 217
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 794 cagacaataggaaggcatgtattgtggtacacaaacacacacacacaggcaaaacaccca 735
Query: 218 tatgaataatataaataagtactttttaaaaacagatgaaaggttaaaatttatttctta 277
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tatgaataatataaataaatagtttttaaaaacagatgaaaggttaaaatttatttctta 675
Query: 278 accatttattcaatttactcatacaaggtaatattattaatattatctattcatgtatat 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 accatttattcaatttactcatacaaggtaatattattaatattatctattcatgtatat 615
Query: 338 taaaatggtaacatttatccttgcataatgttacatgatgttatatacttcttccaaggt 397
|||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 614 taaaatggtagcatttatccttgcataacgttacatgatgttatatacctcttccaaggt 555
Query: 398 attaccacaagaaaagggtaacagcaaagctgaaaccattaattagtgtgataaaatcaa 457
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 554 attaccacaagaaaagggtaacagcaaagctgaaacaattaattagtgtgatataatcaa 495
Query: 458 ggtagagttggatgctactccctggacagggataagacctttaaactttgtatct 512
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggtagagttggatgctactccctggacagggataagacctttaaactttgtatct 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
