BAC Information

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BAC

Clone NameMSMg01-419F15
Chromosome6 (Build37)
Map Location 12,641,137 - 12,641,446
singlet/doubletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419F15.T7 (MSMg01no419_f15.b1)MSMg01-419F15.TJ (MSMg01no419_f15.g1)
ACCAG514473AG514474
length771762
length of high quality
(start - end)
325 (106 - 430)438 (67 - 504)
definitionCHROMAT_FILE: MSMg01no419_f15.b1 PHD_FILE: MSMg01no419_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:51 2005CHROMAT_FILE: MSMg01no419_f15.g1 PHD_FILE: MSMg01no419_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCTATCTATAATTTGGGGCGCTAAAGAAACCTATTCTTACCAAATAC
GCGGAATCTATTTTTCCTTCCAATAAAGAGAAAGACATGAAGTGGAATAA
TCCAGAGTCAGGGACAGAGATAAGATATGATTTTCCTTATCTAAAAATAG
ACAAATCTGAGAAGCAAAGAACAAAATGGTTGATGCCAGGGCCTGGGAAG
GAGAAATGTGGAGTTATTTTGTTCATCCAGTTGTGTGCTAAAAGCACCCA
CAGTTAATAAAATGGCCAACATGGCATTGTGCATTTGAAGTGTACTAAGG
GAGAGGTCATGTTGAATATTGTATATATAAATACACACACACAAACACAC
ACACACACACACACACACATGCACACACACACACACAGAGGAAACTTTGG
AGGTAATGCATATTTATTTTATTTTAAGATTGTGGTACTAGTTACAGTCT
GTGTGCTTATGTTCAAACTACAGTATGCATTTATGATAGGGAATCTCTAC
TTGGAGGTGGATTGTAAAAAAATAAAAGTGGATAATATTTACTACCCTTT
TGTTTATAACAAAGTTATCTACCCCGGGGGGGGGAAAAAACAAATTTTTT
AAAAATCCTGAAAAAAAAGATGGTCGGGGGGGGGGGTGCAATTTCCTTTT
ACCCCTATCTCAGGCGGTAAAAAAAAAACAAAGATCTTGCAAAAAGCGCC
CTCCTTTCCTATTTTTAATAAATGGCCCCCCTTTGCATCTTCCCCTCCTT
TTTCCCCTTTTCCCCCTTTCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAAATGCCCCTCAACAGAGGAATGGATACAGAANATGTGGTACAT
CTACACNATGGAGTACTACTCAGCTATTANAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGAATGGACCTGGAGGGCATCTCCCGGAAGGAAGGAACA
ATTTCCCCAGGAATTCCCCCATATGTCTCCCTGAAAAGGGGAATTAACCC
CAACCTCAGATACCCCGATTTAGAATCAATTTCCTAACCATTGAATTCCT
TAAAATAAGAAACGGGGTGGGGTCCTATCCCCCCCCTTAAAAGTTAAAAA
AACCTTTGTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_f15.b1 MSMg01no419_f15.b1 CHROMAT_FILE:
MSMg01no419_f15.b1 PHD_FILE: MSMg01no419_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:51 2005
         (325 letters)



>mm_chr6_12640937_12641661
          Length = 725

 Score =  543 bits (281), Expect = e-159
 Identities = 308/327 (94%), Gaps = 19/327 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcagggacagagataagatatgattttccttatctaaaaatagacaaatctgagaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcagggacagagataagatatgattttccttatctaaaaatagacaaatctgagaagc 260

                                                                       
Query: 61  aaagaacaaaatggttgatgccagggcctgggaaggagaaatgtggagttattttgttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaacaaaatggttgatgccagggcctgggaaggagaaatgtggagttattttgttca 320

                                                                       
Query: 121 tccagttgtgtgctaaaagcacccacagttaataaaatggccaacatggcattgtgcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagttgtgtgctaaaagcacccacagttaataaaatggccaacatggcattgtgcatt 380

                                                                       
Query: 181 tgaagtgtactaagggagaggtcatgttgaatattgtatatataaatacacacacacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 tgaagtgtactaagggagaggtcatgttgaatattgtatatataaatacacacacaca-- 438

                                                                       
Query: 241 cacaca--cacacacacacacacacatgcacacacacacacacagaggaaactttggagg 298
           ||||||  ||||||||||||||||||              ||||||| ||||||||||||
Sbjct: 439 cacacatgcacacacacacacacaca--------------cacagag-aaactttggagg 483

                                      
Query: 299 taatgcatatttattttattttaagat 325
           |||||||||||||||||||||||||||
Sbjct: 484 taatgcatatttattttattttaagat 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)