BAC Information

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BAC

Clone NameMSMg01-419G10
Chromosome6 (Build37)
Map Location 126,108,667 - 126,108,953
singlet/doubletsinglet
Overlap geneNtf3
Upstream geneA930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneLOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419G10.T7 (MSMg01no419_g10.b1)MSMg01-419G10.TJ (MSMg01no419_g10.g1)
ACCAG514511AG514512
length735720
length of high quality
(start - end)
186 (134 - 319)287 (68 - 354)
definitionCHROMAT_FILE: MSMg01no419_g10.b1 PHD_FILE: MSMg01no419_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:56 2005CHROMAT_FILE: MSMg01no419_g10.g1 PHD_FILE: MSMg01no419_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGTTTTTTTTTATATTTGGGGGNGGAAAAAGGAANTCTTATACAAACAG
GAGGGGNGGANNNNTTTCTTCCCCAAAATAGGNANANNGGGAAGGAAGGT
TCAGGCTAATGCAGCTGAGAACATTACGTCTCAGAACACGGAGCCATGTG
GACGATGACTGTGTTAGTCATCTTTTCATTGCTGTAACAAATACCTGCAA
TGAACAATTTATAATTTATAAAGAGAAAGTATTTATATTGGCACTTGATG
TTTCTTTGGGCCTGTGGCACGGAAACATCATGGAAGGAGCATGCGGTAGA
GGAAGCGAGAGAGAAAGAGTTATATTAGCAAGGGTTTCCTGACCTTTCAT
ACCCCAGTTGACCAAAGGACTTCCAGTGAGTCCCCACCACTTTAGGCTTC
CACCATCTTCCAACAGAATGACAGGGCACCAAGACTTTAACACCTGGGTC
CTTAGAGAATCGTCAGGAAGGACCTGGGACCCAAGTGCTGGATGTAGCTT
CAAACAGTCACTTGCTATCTCCAGAACACACATTTCCCTCAGATCTGGAC
TTAGAAAACAAGCACCCCCCATAATTACCACCGTGGTTCCTACAATGAAG
CCCATTAACCACCTGTCCATTTTTAAAGCTAACTGTCCCTTTGGTCACCA
ATGTCTTCTAACTGCCCAAAAATAAATCTGCATACCCTCGATTTCTTATG
ACTACTTTTTTAAGGAATAAATAAAAACCCACCTG
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTACCAGACGGAATTCTCACTTTCAAACTGTGAACACACATGTA
GGTAGTCCAAGAGATTTTGACAGTTTTCTGCGAAGCGAGCTCTAATGTTA
CCTACACATACTAAGGAGATATATATAGTTATTTTTATTTGACCAGGCTG
CACTTGCTATTTGTTCATTTCCTTATCTGCCAGAGTGCTCCTCTGACCAT
ATTGATTAGGAACTACTGAGGTCTCTAGAACTCTGGGCCTCCTCCCATGA
TAGACTTGTGGTTTGCTCNGTTATGATTGCTCATTATCTGGCAACATCAC
CAAAGAATACATCTGAACAAGTGGTTTTCAAATGAAGCAAAGAACTAAGT
AGCTTACTGGCCTCAAAGGACCCTATTCATTACAAGGTGGTCTTAAACAA
CATGAGGCAGCAGGTGGCCTGCTGACATGGATATGGGGATCAAGCTTTTA
ACTGAGCTCTGTCACTAATTAGCTGTTGCTATGCAACCCTGAATATTCTC
TCCAGGCTGTGATTTCCCTGACTGTACTGGAAGGGCTTGAATTATCAAAA
GAACTCAGGTCTCAAAGTCACCATCCCAGTTCCACCACCCTAATATTTTT
TTTTATCCCGGTCCCATTAATCTTTGCTCAATTGTCCTTAATTGGATCGT
GCCCTGGTCTATTTCCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_g10.g1 MSMg01no419_g10.g1 CHROMAT_FILE:
MSMg01no419_g10.g1 PHD_FILE: MSMg01no419_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:56 2005
         (287 letters)



>mm_chr6_126108467_126109153
          Length = 687

 Score =  549 bits (284), Expect = e-161
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctcactttcaaactgtgaacacacatgtaggtagtccaagagattttgacagtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aattctcactttcaaactgtgaacacacatgtaggtagtccaagagattttgacagtttt 428

                                                                       
Query: 61  ctgcgaagcgagctctaatgttacctacacatactaaggagatatatatagttattttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctgcgaagcgagctctaatgttacctacacatactaaggagatatatatagttattttta 368

                                                                       
Query: 121 tttgaccaggctgcacttgctatttgttcatttccttatctgccagagtgctcctctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttgaccaggctgcacttgctatttgttcatttccttatctgccagagtgctcctctgac 308

                                                                       
Query: 181 catattgattaggaactactgaggtctctagaactctgggcctcctcccatgatagactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 catattgattaggaactactgaggtctctagaactctgggcctcctcccatgatagactt 248

                                                          
Query: 241 gtggtttgctcngttatgattgctcattatctggcaacatcaccaaa 287
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 247 gtggtttgctctgttatgattgctcattatctggcaacatcaccaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)