BAC Information

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BAC

Clone NameMSMg01-420J20
Chromosome6 (Build37)
Map Location 71,345,270 - 71,345,764
singlet/doubletsinglet
Overlap geneRmnd5a
Upstream geneIgk, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a
Downstream geneLOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420J20.T7 (MSMg01no420_j20.b1)MSMg01-420J20.TJ (MSMg01no420_j20.g1)
ACCAG515439AG515440
length724771
length of high quality
(start - end)		---495 (63 - 557)
definitionCHROMAT_FILE: MSMg01no420_j20.b1 PHD_FILE: MSMg01no420_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:31 2005CHROMAT_FILE: MSMg01no420_j20.g1 PHD_FILE: MSMg01no420_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCATAATTAGTGGCGCGANAAGAAGANCACAGTGCGGGAGCGAGCGGGA
NANNGNAGTTTTTTCAGNCATTCAGCGAGAAAANGNNGACCACAGGCAGG
AGGGGAAGAGNGGCTATGAACAGCCGGCGGACGACCCATAAAACNGAAGA
ACNCGCCGCCACCTCCATGGGAGAGGAATGTGGCATCGCATCAGGTGTTA
TGATGTGGTGGAGTGACGACCCACGTTTCCATGCGGAACAGGAGAGTAAT
CTTTTGACTGAGGAGCAGCCCCAACCCTCCCGCGAAGGATGATAAAAATG
ACGCCGAGGAGACTTTTTTTTTTTATAGGACACACACNGNGCACCANCAC
ACTTTTTATCCCCCTCGTGCAGGTGGTGTGCCCCCAGAAATCACGGAGAC
CCAGACGAGGATCTCCAGAACAAAAGGTGTGGGGCGCGAGATATATTTAT
ATATACCCACACCCACATATAACATATGAGACGAGAGCGTCCTCCACCAA
CATACTCATAACCCCCAGAGATACACATAAATACGTGCGCATACCCCCCA
GAGAGAGATATAATATAGCGCAAGGGGACACAAACAACTCTTTATATTAC
GAGCCTCTCACACAGGCTCTCAAGTTTACACACGGAACCCTGAGAATATT
TTTTTTTTTAATTCCCCCCAAGCAAAAACCTTTCCAACACAAACCGGTAA
AGCCAAAGACAAAAAATACCACTN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTCCCCCTTTGTCAGTTTTTCTTAAAGATCGTTATTAA
TCGACTTAAGTCTGTGTGTCCCTGGCTGGCGTGGAACTCGTTTTGTCTAG
ATTGTATCAATCAGACTGGCCTCAAACTCAAAATCCCCTTTCTCTGCTGG
GATTAAAGGTGTGTGCCACCACACCTGGCAGTAATGGACTTTGAGAATAA
GAAGGAAGGAACACGAAGTATTTGTGGAGGCTCTGGTATTCAGTAGCAGG
TCTGATAGATAATTTCAAACTTTTATATGGTTTGATTTATTTGTGGCAAA
AACACAATGTTGATATCATGCCGTGAGCTTTTAATGTGAACAAATGACTA
AAAGTCATGTTGCGATTAAGCTTAAGCTGATGTCACAAGCCTGCAATTCC
AGATATGTAGGAGGCTGAGGCAAGAGGATTGTAAAATCAAGGCCTGCCTG
GGCAACTTATGGAGATCCTATCTCAAAAGGCACAGAAAGGGGGCACATGC
ACAGGGGTGATGGTCAGGAGCTAGGATGGGGCGCTGGACTAAAGCTCGCC
TAGCCACATGCAAACCCTGCATTGGACTCCAGCACCGGGGAGAAACAAAA
AAGAAATTTTTGCTACCTCCCCGCTTCAAGTTTTTTCTGGACCATTTCCT
ACAATTTCATAGGAAACTTCCAATTGAAGCCCCCCCAAAGTGACTTAATT
TTAAACGGCCCTTGGGGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_j20.g1 MSMg01no420_j20.g1 CHROMAT_FILE:
MSMg01no420_j20.g1 PHD_FILE: MSMg01no420_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:31 2005
         (495 letters)



>mm_chr6_71345033_71345927
          Length = 895

 Score =  957 bits (495), Expect = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccccctttgtcagtttttcttaaagatcgttattaatcgacttaagtctgtgtgtccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctccccctttgtcagtttttcttaaagatcgttattaatcgacttaagtctgtgtgtccc 673

                                                                       
Query: 61  tggctggcgtggaactcgttttgtctagattgtatcaatcagactggcctcaaactcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tggctggcgtggaactcgttttgtctagattgtatcaatcagactggcctcaaactcaaa 613

                                                                       
Query: 121 atcccctttctctgctgggattaaaggtgtgtgccaccacacctggcagtaatggacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atcccctttctctgctgggattaaaggtgtgtgccaccacacctggcagtaatggacttt 553

                                                                       
Query: 181 gagaataagaaggaaggaacacgaagtatttgtggaggctctggtattcagtagcaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gagaataagaaggaaggaacacgaagtatttgtggaggctctggtattcagtagcaggtc 493

                                                                       
Query: 241 tgatagataatttcaaacttttatatggtttgatttatttgtggcaaaaacacaatgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgatagataatttcaaacttttatatggtttgatttatttgtggcaaaaacacaatgttg 433

                                                                       
Query: 301 atatcatgccgtgagcttttaatgtgaacaaatgactaaaagtcatgttgcgattaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atatcatgccgtgagcttttaatgtgaacaaatgactaaaagtcatgttgcgattaagct 373

                                                                       
Query: 361 taagctgatgtcacaagcctgcaattccagatatgtaggaggctgaggcaagaggattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taagctgatgtcacaagcctgcaattccagatatgtaggaggctgaggcaagaggattgt 313

                                                                       
Query: 421 aaaatcaaggcctgcctgggcaacttatggagatcctatctcaaaaggcacagaaagggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaaatcaaggcctgcctgggcaacttatggagatcctatctcaaaaggcacagaaagggg 253

                          
Query: 481 gcacatgcacagggg 495
           |||||||||||||||
Sbjct: 252 gcacatgcacagggg 238


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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