BAC Information

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BAC

Clone NameMSMg01-420P21
Chromosome6 (Build37)
Map Location 75,461,719 - 75,462,060
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420P21.T7 (MSMg01no420_p21.b1)MSMg01-420P21.TJ (MSMg01no420_p21.g1)
ACCAG515726AG515727
length746876
length of high quality
(start - end)
342 (175 - 516)---
definitionCHROMAT_FILE: MSMg01no420_p21.b1 PHD_FILE: MSMg01no420_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:59 2005CHROMAT_FILE: MSMg01no420_p21.g1 PHD_FILE: MSMg01no420_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGACGGAC
CGCGGAATTCCCTGCTTTCCTTGTGGATTCCGAAAAAGTGTGCATGTCCT
TGAACATGAGCATGTACAAACCAAAGACAGAGAGAGGGAAAAAGGAAGGA
GAAACCAGAGAAGTCACTGTACCCAACTAATTTTGGGGGTTGTTTCAGTG
AGGATAAGTGGTAACAATATAAAACTTAGGGACTCTATCAAGAAAGAGTT
GCTCTTTCTGGGTTTTGTGATTAAAATGGCGATTAAGCTTTCAGCAACAA
AACATAAATAATAAGTGGACTGATTAGATAGTTCAGTTGTTAAGAAAGCT
TGATGTGCAAGCCTGAGGACTTGATATCCAGATCAGTTTAAAAAGCTGAT
TTCTCTCATAGATCTGTAATAACAGTTTTCTGTGAGGTTAGAGACCAGAG
CTTGTTAGCTATAAGACCAGCTTCAGGTTTTAATGGGAGACCCTGTCTCA
AGTGGTAAAGCAGAGAAAGATACATCCTCTTTAACTTTTTCTTCATATAT
CTACATACACATGGTTGTAGAGCACACACACCTATACACACCTATATTAA
TGCTTATAATATACATATAACACCTCCCAGCACAAAGACTTAAATTTACC
CAACCCCCCCCCCCCCAAAACCCCCTCCCTTACATGCAAGCCCATGGGCC
CAAGTGAATTCCTATAAAAGGGAAGAAAAAAACGGAAAACTGGCTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCTAACCTAGGTGCCTTGGCTCTGAGAGGAGGAAACCC
CAGGAACAGAACACGCGATGTGTAGTTTCACACTTGTTCTGTTTTCTCCT
GGCAGTGTTGCACTGATTCACCCTTAGCTTCCTGCGACTCGTCACCATCC
AGACACGGGCGAGCACACGCTGAAATAATTATGTCCGGCCGGCACACCAG
GACCTAAATGGATATGTCGTTAGTCGCGCCGCCGCCGTTCCTTTATATCA
CATAGATCCCCCCCTGACGTCGAGACGACACATAATCCCCGATACCCTGG
TCTTTTCCTTTCCTACGCCCCACAGTTCTGTATTTCTCTCCGCCCCGTGT
TCTGCTATCTTCCACCATTGACTCCTCTTTTCCTACTTGCTTACCTCCGC
TTTTCATCTACCCGTTCATACAATCCGATATCCCGCATGGACGGTTACCT
GATTTCTTTTTCCCTTTTCACCTCTATTCATCCCACGCATAAATTATTAG
GCCTCATCTTCTACGCGTTTTCATTTCATGACACTTCATTATCTCTGGAT
CGCCTCTCTATCTTCTCCCTCTCTCCTCTCGTCGCCTAGTTGTTTTATTC
CGAGTGTATCCCCTTGCTTCGCCTCCACTTTTTTATTTCTCTATCCCGCC
TCTTCTTTTTATCTCGCTTTTCTTCACCCCATCTGTTGTTTTGTATCCCT
TCTTACCTCACCCCGCACCCGATAGTCGATCCCCGCGTTCTCACCTATTT
CTCTTTACTCTCTACATCTTGTTCCACATTCCTCATCGCTCTTGATCCCG
GTATCAATTGTATCGCTCTCGCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_p21.b1 MSMg01no420_p21.b1 CHROMAT_FILE:
MSMg01no420_p21.b1 PHD_FILE: MSMg01no420_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:59 2005
         (342 letters)



>mm_chr6_75461519_75462260
          Length = 742

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactaattttgggggttgtttcagtgaggataagtggtaacaatataaaacttagggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactaattttgggggttgtttcagtgaggataagtggtaacaatataaaacttagggact 260

                                                                       
Query: 61  ctatcaagaaagagttgctctttctgggttttgtgattaaaatggcgattaagctttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ctatcaagaaagagttgctctttctgggttttgtgattaaaatggcgattaggctttcag 320

                                                                       
Query: 121 caacaaaacataaataataagtggactgattagatagttcagttgttaagaaagcttgat 180
           |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||
Sbjct: 321 caacaaaacataaataataaatggactgaagagatagttcagttgttaagaaagcttgat 380

                                                                       
Query: 181 gtgcaagcctgaggacttgatatccagatcagtttaaaaagctgatttctctcatagatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcaagcctgaggacttgatatccagatcagtttaaaaagctgatttctctcatagatc 440

                                                                       
Query: 241 tgtaataacagttttctgtgaggttagagaccagagcttgttagctataagaccagcttc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tgtaataacagttttctgtgaggttagagaccagagcttgttagctataagaccggcttc 500

                                                     
Query: 301 aggttttaatgggagaccctgtctcaagtggtaaagcagaga 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggttttaatgggagaccctgtctcaagtggtaaagcagaga 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)