BAC Information

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BAC

Clone NameMSMg01-422E23
Chromosome6 (Build37)
Map Location 68,824,445 - 68,824,694
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88
Downstream geneIgkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422E23.T7 (MSMg01no422_e23.b1)MSMg01-422E23.TJ (MSMg01no422_e23.g1)
ACCAG516729AG516730
length720726
length of high quality
(start - end)		543 (44 - 586)250 (69 - 318)
definitionCHROMAT_FILE: MSMg01no422_e23.b1 PHD_FILE: MSMg01no422_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:44 2005CHROMAT_FILE: MSMg01no422_e23.g1 PHD_FILE: MSMg01no422_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAGAACCGCGGAATTCTTT
CCTCTTTACCCTCTCATCTTCTCTGCAACGTTGGGCATTAAAAGTCGACA
CCCATTTTGGAGCTCTTTTTTGTTTCTCTTCCAGTCCAGATCCTGCTCAT
TTACTAGAGTTTCATATGAATAAAAAGAAGGCACTAAAAAGATTCAATTC
CAAAACTTAATATTAGGATATGTACTCTGCCAAGAGGGGAATATTAGTTT
GAAGTTATAATGAATTGTTTGAAATACAGCCAACAACTTTTCATAATGAA
CTCAATTTCTTTCCTTTATTAAGAAAACCTTACTTATGACTACTTAAATG
AATACTCAAAAGTTGCCTGTATAATATGTTCAATAAATAATTACACAAAA
ATATACCCAAGCAACTTTCAATACCATGTAAAAATCTAAGTGAAAATAGT
CAAGATTTTGGATTGTTGTACTAAACTTTTTGTGACCTTCAGAATGATGT
CTAGCAAGCAGTTGCCAAAAATTCTAATCACATAACTACATAAAAGATGA
AAACAGAAATAAAATACAGGATTCCTTTCTAGCCAAAACAAAACATATGT
TATTTTTGGAAGACTTTTTATACTTGCACATAACCTTGAGTTTCTAATAA
CTTCTGGTAATATGAGATATGAGTAATTGAATATTCATGGACCCCCTAAA
GAAATCCTAGTACTTGAACA

AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTTTGTGGTCTAGGAGGAGGCAGAATTCATT
GATTTGATTTTTGTTTTGATTGAAGGCTTGGTTCAGTGTACATGTTCTTT
TCCCATGATGTATGTGATTGCAATAATATGAATGGTAAGACACTGGGATA
TTATAGAAAACTTATTTATTATCTTATGTAATGCATAAGTATTAAAGGTA
ATGTAAATTGAAAATAGAATTGTATTCAATTCACTAATATTCACAAATGT
GAAGGTTAAAAAAATAAAATTGTATCAATATAGAAAAAATACCTAACCAA
AACTTAATAGAAATATATGAAGGAAAATAATCAAACCAACTTTAAAATAG
TAGTGTAAAAATGTTCATACCCATCAATAACTGTGAATTAAACTGGAATA
AAACTCTCATTCAAAAAATAGTTAAATATATGCAAATAGGGAAATTAACT
CTTGGCTAGAGAATGAGTTTTCTTCATGAATAAGGACATAGTCTAGAACT
TCAGGAGCCAGTGAACATCCTTTATGACAGTAAAAATCAAAAGGGAGTAG
GATACTCAGTATTTCTAGTAATAAAACAGAGTTTACTTCTAAACCATAAA
ATGCCACACTGTATCTGTATAGTAAAGGATATCCTTTATCAAACGGAAAA
TGGCCTCCTTTTTCTGTCTGCATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_e23.g1 MSMg01no422_e23.g1 CHROMAT_FILE:
MSMg01no422_e23.g1 PHD_FILE: MSMg01no422_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:44 2005
         (250 letters)



>mm_chr6_68824245_68824894
          Length = 650

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttgtggtctaggaggaggcagaattcattgatttgatttttgttttgattgaaggct 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tgtttgtggtctaggaggaggcagaattcattgatttgacttttgttttgattgaaggct 260

                                                                       
Query: 61  tggttcagtgtacatgttcttttcccatgatgtatgtgattgcaataatatgaatggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttcagtgtacatgttcttttcccatgatgtatgtgattgcaataatatgaatggtaa 320

                                                                       
Query: 121 gacactgggatattatagaaaacttatttattatcttatgtaatgcataagtattaaagg 180
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gacactggaatattatagaaaacttatttattatcttatgtaatgcataagtatgaaagg 380

                                                                       
Query: 181 taatgtaaattgaaaatagaattgtattcaattcactaatattcacaaatgtgaaggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 taatgtaaattgaaaatagaattgtattcaattcactaatattcacaaaagtgaaggtta 440

                     
Query: 241 aaaaaataaa 250
           ||||||||||
Sbjct: 441 aaaaaataaa 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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